Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00992 ATGGGTGTTGATTACTATAAAATCCTTCAGGTAGATCGAAGTGCCAAAGATGATGATCTCAAGAAAGCTTATCGAAAACTCGCCATGAAGTGGCACCCTGATAAGAACCCTAATAGCAAAAAAGAAGCTGAAGCCAAATTCAAGCAAATATCTGAAGCCTATGATGTTTTGAGTGATCAACAAAAGAGAGCTGTGTATGATCAGTATGGTGAGGAGGGATTGAAGGGGCAGATGCCTCCACCGGGTGCCGGTGGCAGCGATGGCGGGCCGACAACTTTCCGGTTCAACCCGAGAAGTGCAGATGATATATTCTCGGAGTTTTTCGGGTTTTCGAGCCCCTTTGGTGGAATGGGTGATATGGGTGGTCGTGCTGGTGCATCTGGATTTCCAAGGGGTATGTTTGGGGATGACATTTTCACTTCTTTTAGGAATGCTGCTGGAGAAGGCTCTGCCAATGTGCCAAGGAAAAGTGCACCCATTGAGAGAACATTGCAATGCAGTTTGGAGGATTTGTACAAAGGGACTACCAAAAAAATGAAGATTTCCAGGGATGTTACTGATGCCAATGGGAGGCCCAACACAGTAGAGGAAATTCTAACCATTGAGATCAAGCCAGGTTGGAAGAAAGGAACAAAAATAACTTTTCCAGAGAAGGGAAATGAACAGAGAGGAGTTATACCTGCAGACCTTGTTTTTATTATTGATGAGAAGCCTCATGGTGTATTTAAGAGGGATGGAAATGATCTTGTTGTCACCCAGAAGATATCTCTTGTAGAAGCTCTGACAGGTTACACAGCACAACTGACAACTCTTGATGGGAGAAATCTTACGGTCCCCATCAACTCTATCATTAGTCCAACATATGAAGAAGTTATTAAGGGAGAGGGTATGCCCATTCCTAAGGAACCATCCAAAAAGGGAAACTTAAGAATCAAGTTCAATATCAAGTTTCCTTCCAGACTTACATCAGAGCAGAAAACTGGTATTAAGCGATTATTGACATCTCCATAA 1011 0.4313 MGVDYYKILQVDRSAKDDDLKKAYRKLAMKWHPDKNPNSKKEAEAKFKQISEAYDVLSDQQKRAVYDQYGEEGLKGQMPPPGAGGSDGGPTTFRFNPRSADDIFSEFFGFSSPFGGMGDMGGRAGASGFPRGMFGDDIFTSFRNAAGEGSANVPRKSAPIERTLQCSLEDLYKGTTKKMKISRDVTDANGRPNTVEEILTIEIKPGWKKGTKITFPEKGNEQRGVIPADLVFIIDEKPHGVFKRDGNDLVVTQKISLVEALTGYTAQLTTLDGRNLTVPINSIISPTYEEVIKGEGMPIPKEPSKKGNLRIKFNIKFPSRLTSEQKTGIKRLLTSP* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00992 336 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 333 - -
Rops4g00992 336 Pfam DnaJ domain 4 67 IPR001623 -
Rops4g00992 336 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Rops4g00992 336 Gene3D - 239 319 - -
Rops4g00992 336 SUPERFAMILY Chaperone J-domain 3 118 IPR036869 -
Rops4g00992 336 Pfam DnaJ C terminal domain 160 318 IPR002939 -
Rops4g00992 336 CDD DnaJ 4 59 IPR001623 -
Rops4g00992 336 Gene3D DnaJ domain 3 119 IPR036869 -
Rops4g00992 336 PRINTS DnaJ domain signature 6 24 IPR001623 -
Rops4g00992 336 PRINTS DnaJ domain signature 42 62 IPR001623 -
Rops4g00992 336 PRINTS DnaJ domain signature 24 39 IPR001623 -
Rops4g00992 336 PRINTS DnaJ domain signature 62 81 IPR001623 -
Rops4g00992 336 SMART dnaj_3 3 62 IPR001623 -
Rops4g00992 336 SUPERFAMILY HSP40/DnaJ peptide-binding domain 160 239 IPR008971 GO:0006457|GO:0051082
Rops4g00992 336 MobiDBLite consensus disorder prediction 72 92 - -
Rops4g00992 336 Coils Coil 40 60 - -
Rops4g00992 336 SUPERFAMILY HSP40/DnaJ peptide-binding domain 241 327 IPR008971 GO:0006457|GO:0051082
Rops4g00992 336 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Rops4g00992 336 FunFam DnaJ subfamily B member 13 3 118 - -
Rops4g00992 336 FunFam Dnaj homolog subfamily b member 156 237 - -
Rops4g00992 336 CDD DnaJ_C 158 321 - -
Rops4g00992 336 Gene3D - 159 237 - -
Rops4g00992 336 FunFam DnaJ subfamily B member 13 239 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00992 Rops-Chr4 26891133 26894771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00992 5 69 C2H2 Transcription Factor Family AT1G74250 37.681 6.68e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00992 K09510 - gmx:100777607 567.385