Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Rops4g00991 | ATGGCATCTTCATTCTCAACGCAGTTGCTGCAAAGTCAGAGTCTACTTCCTCGTTTTCATCATGTCCAGGGAAATTTTAGCCAAGATGTGTCAAAGGTTCGAAGGCCACGTGTGATGCCAGCGTGCCATATCACGGCAGTTACAAAGCGAAAAACATTGGCATCGAGATCTCATTATGCTGCAAGGTTTCCTGTCACACAACAATCTGCTGGCAGGATTGTTTTTGGCCTATTTGGAGAGGTTGTTCCCAAAACAGTTGAGAATTTCCGAGCTTTGTGCACAGGAGAGAAAGGATATGGTTACAAAGGATGCTACTTCCATCGTATAATCAAAGATTTCATGATTCAGGGAGGGGATTTCACTGAAGGAGATGGAACTGGTGGAATCAGTATCTATGGTGCTAGATTTGAAGACGAGAGTTTTGCTTTGACGCATGTTGGTCCTGGAGTTTTGAGCATGGCAAATGCCGGTCCTAATACCAATGGTAGTCAATTTTTCATTTGCACTGTACAGACTCCATGGTTAGACAATCGCCATGTTGTGTTTGGACAAGTCATTGATGGAATGGATATTGTGAAGACACTTGAATCACAGGAGACAAGCAGGTGA | 609 | 0.4368 | MASSFSTQLLQSQSLLPRFHHVQGNFSQDVSKVRRPRVMPACHITAVTKRKTLASRSHYAARFPVTQQSAGRIVFGLFGEVVPKTVENFRALCTGEKGYGYKGCYFHRIIKDFMIQGGDFTEGDGTGGISIYGARFEDESFALTHVGPGVLSMANAGPNTNGSQFFICTVQTPWLDNRHVVFGQVIDGMDIVKTLESQETSR* | 203 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Rops4g00991 | 202 | SUPERFAMILY | Cyclophilin-like | 55 | 200 | IPR029000 | - | |
| Rops4g00991 | 202 | ProSitePatterns | Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. | 101 | 118 | IPR020892 | GO:0003755|GO:0006457 | |
| Rops4g00991 | 202 | ProSiteProfiles | Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. | 65 | 202 | IPR002130 | GO:0000413|GO:0003755 | |
| Rops4g00991 | 202 | FunFam | Peptidyl-prolyl cis-trans isomerase | 46 | 202 | - | - | |
| Rops4g00991 | 202 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE | 65 | 201 | - | - | |
| Rops4g00991 | 202 | Pfam | Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD | 66 | 201 | IPR002130 | GO:0000413|GO:0003755 | |
| Rops4g00991 | 202 | Gene3D | - | 44 | 202 | IPR029000 | - | |
| Rops4g00991 | 202 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 77 | 92 | IPR002130 | GO:0000413|GO:0003755 | |
| Rops4g00991 | 202 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 149 | 164 | IPR002130 | GO:0000413|GO:0003755 | |
| Rops4g00991 | 202 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 164 | 176 | IPR002130 | GO:0000413|GO:0003755 | |
| Rops4g00991 | 202 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 177 | 192 | IPR002130 | GO:0000413|GO:0003755 | |
| Rops4g00991 | 202 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 106 | 118 | IPR002130 | GO:0000413|GO:0003755 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Rops4g00991 | Rops-Chr4 | 26872661 | 26873553 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Rops4g00991 | 67 | 197 | U-box Gene Family | AT5G67530 | 46.970 | 1.23e-29 | 113 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Rops4g00991 | K03768 | - | gmx:100526955 | 291.967 |