Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00985 ATGGCTCATATTCCATGTTGCAAATCTTGTATTTATAATCTTTTACATGCAGGTAGCCACTGCAACAGAATTTCTTCATCCTTTGGAAAAATGGGTACTCGAAATCACCAGCATGAGGCATGGCTTTTGGAGAATGGGAACATCAAGGGGTTGAGTAGAGAGATGAGACATGGTAGAATGGCACATAACAAGTCATCCTCTTCATTACGCAAGAAATCTGAATTCAGTTTTGTCTCCAAGGTTCACTCTGGGTTCCTCAGAGACGTGCTTGTTAACTTGCAAGAGGTTATTTTGGGAACCAAGCTTTCGGTTCTGTTCCTAGCTATTCCATTTGCCATCATTGCTGAATGCTATGGCTTTGCACGAAATGAAGGTGGTCTCGGTGTAAAAAACATAGAGTGGTTCAATTATGCTTTACTTGGCAAATGGAGATGGCGGTTTCTTGTAGAGAGTGAAGCTATTTGGGTGAAGATTCTAAAGGCTAGGTATGGGGTTATTAGTGAAGGTAAATTCGGGGGTCCAAACTCTTGTCATAGTCATAGTTCCTTATGGTGGAAAGATCTTTGGAAGCTGGATTCAGGTAGGAATTCCCCTCAAAACTGGTTGCTGGATGGTCTTCACAAAAGTATTGGGGATGGGACTTCCACCTCCTTTTGGGTAGACTCTTGGTTAGGGAGTATGAGTTTTAAAGAATTGTTCCCTAGATTATTTCAGTTATCTGTGAATAAAGCTGCAAAAGTAGCTGAAGTGAGGGTTCGGGTAAATGATGAATGGTTTTGGAGACTTTCATGGAGGAGGTCACTCTTTTCCTGGGAGGAAGCTTTGGTTGTAGAGCTCTCTAACTTGCTGTCTTCTGTTACTACTTTGGGTGCTGGCCAGGATTCTTGGAGGTGGTTTTTTGATCCCTCGGGGCATTATTCGTGTCGCTCGGCTTATTTTGTACTGTCTAGTCACGCTGCTGCCATTAATTTTAGGAGTTTTGGTTTCAATCTTGTCTTATTCAACAAGTTGTGGACTGGTTTTGCGCCCCCAAAAATTTTAGTCTTCTCTTGGCGTTTAATTCTTGATCGGCTGCCTACCATGTTGAATCTTAGAAGGAGACAAATCCCTCTTCAGAATCAACAACTTCTTTGTGTTTTTTGCTCTGATGTTGATGAATCTGCTGAGCATCTCTTTATTAGGTGCAGATTTTCCGTGGCTCTTTGGTCTGCTGTTTTTGCTTGGACTGGTTTTCAGGTTGTCTCTCCCAATGTTATTCATGAGCACTTTTTGCAATTCTGTGGCCTGGTCCGGAAGAAGAAACAAGGGAGAGCATGGCAGGTTATTTGGCATTCTGTTGTGTGGAGCATATGGTTAGAACGTAACAATGTAATTTTTAACAAAGAGGGGGCTGATTTCCTTAAAGTTTTGGATTCTATTCAGTTTAGGTCTTGGCATTGGTTACTAGCTAAGTTAGTTCCTGTTGTATTTTCTCTGCAGTTTTCTGCAGTTTCTTTGAGTACTCCTGGTACTCTGCCTTGGGTTTTTGCGTCGAGCTTACTTGGGCTTACCCCACTTGCTGAACGAGTCAGTTTTCTGACAGAGCAGGTTGCTTATTACACTGGTCCCACAGTGGGAGGACTTTTGAATGCAACATGTGGGAATGCTACTGAGCTCATCATAGCAATTTTTGCCCTTAGAAGTAACAAAATTGCTGTGGTCAAGTATTCTCTCCTGGGTTCCATCCTTTCTAACCTTCTTTTAGTTCTTGGAACCTCTCTATTTTGTGGTGGCCTTGCTAACCTTAGAAAGGAACAAAAATATGATAGAAGACAGGCAGATATGAACTTGCTTATGCTTCTTGTGGCATTGTTGTGCCACTTGCTTCCAATGCTGTTCCAATATGGTGGTGCTTCAGCAGCTGTCACTGATGACTCATCTTTGCAGTTGTCGAGAGTTGCTAGCATTGTGATGGTGATTGGATATTTTGCTTACCTTGTTTTCCAACTGTGGACTCATCGAAAATTGTTTGAAGCCCAGGAAGAAGACGAAGAGGGTGAAGATGATTCAGAAGAACCAGTGATAGGATTTTGGAGTGGTTTTACTTGGGTGGTAGGGATGACTGTGCTCATTGCTTTGTTGTCTGAATATGTGGTGGAGACAATTGAGGATGCATCAGATTCATGGGGTCTATCTGTCAGCTTCCTCAGCATAATCTTGCTACCAATAGTTGGCAATGCAGCTGAACACGCAGGAGCGATCATATTTGCTTTCAAGAACAAGCTGGACATTTCATTGGGTGTTGCTTTGGGTTCTGCAACTCAAATTAGCATGTTTGTGGTTCCCCTATGTGTGATTGTTGCTTGGATTTTTGGTATCAAAATGGACCTCAACTTCAATCTCATAGAGACAGGTTCTCTAGCTTTGGCAATAATAACCACAGGCTTCACATTACAGGATGGAACTTCTCACTACATGAAAGGCCTTGTTCTCCTGCTCTGCTACATTGTTATTGGGGCCTGTTTTTTTGTACAGAGAACACCCTTCAGTCAAGCTGACGTCGGTAACATAACGCTTAAATCAGCAACTGATGCAGATTTTAGAACTTGA 2589 0.4233 MAHIPCCKSCIYNLLHAGSHCNRISSSFGKMGTRNHQHEAWLLENGNIKGLSREMRHGRMAHNKSSSSLRKKSEFSFVSKVHSGFLRDVLVNLQEVILGTKLSVLFLAIPFAIIAECYGFARNEGGLGVKNIEWFNYALLGKWRWRFLVESEAIWVKILKARYGVISEGKFGGPNSCHSHSSLWWKDLWKLDSGRNSPQNWLLDGLHKSIGDGTSTSFWVDSWLGSMSFKELFPRLFQLSVNKAAKVAEVRVRVNDEWFWRLSWRRSLFSWEEALVVELSNLLSSVTTLGAGQDSWRWFFDPSGHYSCRSAYFVLSSHAAAINFRSFGFNLVLFNKLWTGFAPPKILVFSWRLILDRLPTMLNLRRRQIPLQNQQLLCVFCSDVDESAEHLFIRCRFSVALWSAVFAWTGFQVVSPNVIHEHFLQFCGLVRKKKQGRAWQVIWHSVVWSIWLERNNVIFNKEGADFLKVLDSIQFRSWHWLLAKLVPVVFSLQFSAVSLSTPGTLPWVFASSLLGLTPLAERVSFLTEQVAYYTGPTVGGLLNATCGNATELIIAIFALRSNKIAVVKYSLLGSILSNLLLVLGTSLFCGGLANLRKEQKYDRRQADMNLLMLLVALLCHLLPMLFQYGGASAAVTDDSSLQLSRVASIVMVIGYFAYLVFQLWTHRKLFEAQEEDEEGEDDSEEPVIGFWSGFTWVVGMTVLIALLSEYVVETIEDASDSWGLSVSFLSIILLPIVGNAAEHAGAIIFAFKNKLDISLGVALGSATQISMFVVPLCVIVAWIFGIKMDLNFNLIETGSLALAIITTGFTLQDGTSHYMKGLVLLLCYIVIGACFFVQRTPFSQADVGNITLKSATDADFRT* 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00985 862 Coils Coil 860 862 - -
Rops4g00985 862 Pfam zinc-binding in reverse transcriptase 306 402 IPR026960 -
Rops4g00985 862 Gene3D - 536 675 IPR044880 -
Rops4g00985 862 Gene3D - 686 836 IPR044880 -
Rops4g00985 862 FunFam Vacuolar cation/proton exchanger 536 680 - -
Rops4g00985 862 NCBIfam calcium/proton exchanger 479 836 - -
Rops4g00985 862 Pfam Sodium/calcium exchanger protein 505 664 IPR004837 GO:0016020|GO:0055085
Rops4g00985 862 Pfam Sodium/calcium exchanger protein 694 831 IPR004837 GO:0016020|GO:0055085
Rops4g00985 862 NCBIfam calcium/proton exchanger 492 836 IPR004798 GO:0006816|GO:0015369
Rops4g00985 862 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 467 841 IPR004713 GO:0006812|GO:0008324|GO:0016020
Rops4g00985 862 FunFam Vacuolar cation/proton exchanger 681 837 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00985 Rops-Chr4 26695071 26700436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00985 467 844 Antiporters AT2G38170 66.837 4.33e-172 504
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00985 K07300 - gmx:100782052 556.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g01921 8 43807554 43811061 Rops4g00985 4 26695071 26700436 PCT