Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00946 ATGGAGGGGAAAGATGAAGATGTGAGAGTAGGAGCCAATAAGTATAGAGAGAGGCAACCAATAGGAACTGCTGCTCAGGCTCAAGATGCTAAAGACTACAAAGAGCCACCCTCAGCACCTCTCTTTGAACCTGGAGAGTTATCATCATGGTCTTTCTACAGAGCAGGGATAGCAGAGTTTGTGGCCACGTTCTTGTTTCTTTACATCACAGTGTTAACAGTGATGGGTGTGGCCAAATCCAATAGCAAGTGTTCCACAGTGGGTGTCCAAGGCATAGCTTGGGCCTTTGGTGGAATGATCTTTGCTCTTGTCTATTGCACTGCTGGCATCTCAGGGGGTCACATTAACCCAGCAGTGACATTTGGGCTGTTCTTGGCACGCAAGCTCTCTCTGACTAGGGCAGTGTTTTACATAATTATGCAATGCTTGGGAGCTATCTGTGGTGCTTGGGTTGTTAAGGGGTTCCAACCACACCAGTATGAGAGGCTTGGTGGTGGTGCCAACACTCTCAGTAATGGATACTCCAAAGGTGCTGGCCTTGGAGCAGAGATTGTTGGCACATTTGTGCTTGTTTATACTGTCTTCTCTGCTACTGATGCCAAGCGAAATGCTAGAGACTCCCACGTTCCTATTTTGGCTCCACTTCCAATTGGTTTTGCTGTTTTTCTGGTGCATTTGGCTACTATTCCTATCACTGGGACTGGTATCAACCCAGCTAGAAGTCTTGGTGCAGCCCTTATATACAACAAGGACCAAGCTTGGGACGACCATTGGATTTTTTGGGTTGGACCTTTCATTGGGGCAGCACTTGCAGCTCTGTACCATCAGATAGTAATCAGGGCCATCCCCTTCAAGTCAAAGTGA 864 0.4745 MEGKDEDVRVGANKYRERQPIGTAAQAQDAKDYKEPPSAPLFEPGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVAKSNSKCSTVGVQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYIIMQCLGAICGAWVVKGFQPHQYERLGGGANTLSNGYSKGAGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFWVGPFIGAALAALYHQIVIRAIPFKSK* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00946 287 ProSitePatterns MIP family signature. 114 122 IPR022357 -
Rops4g00946 287 FunFam Probable aquaporin PIP1-2 39 287 - -
Rops4g00946 287 NCBIfam MIP family channel protein 58 275 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops4g00946 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 13 283 IPR034294 -
Rops4g00946 287 Gene3D Glycerol uptake facilitator protein. 39 286 IPR023271 -
Rops4g00946 287 PRINTS Major intrinsic protein family signature 54 73 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops4g00946 287 PRINTS Major intrinsic protein family signature 258 278 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops4g00946 287 PRINTS Major intrinsic protein family signature 133 152 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops4g00946 287 PRINTS Major intrinsic protein family signature 218 240 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops4g00946 287 PRINTS Major intrinsic protein family signature 182 200 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops4g00946 287 PRINTS Major intrinsic protein family signature 96 120 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops4g00946 287 CDD MIP 54 278 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops4g00946 287 Pfam Major intrinsic protein 46 275 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops4g00946 287 SUPERFAMILY Aquaporin-like 47 280 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00946 Rops-Chr4 24895703 24898070 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00946 1 287 Major Intrinsic Protein MIP AT3G61430 86.063 4.48e-179 493
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00946 K09872 - cave:132192212 553.518