Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00934 ATGATAGTTGCAATGGACTTGAATGCCTCGCCAGTTCCGGAGGAAGATGAAGATACTTTTGAGGAGAAGATACATGTTGAAGAGTATACTGCACCTGAAGAACGCATAGAAACTGGAGCTGATATAGCACGCCGGGAGCGTGAAGAAAGAAAGAGACGGTTGAAGAGGGAACGTTCAGATGATAGACCTGTGCATGTATCGCAGTCACCTGGATATGATCAGCTATTTCATGCTAAGAACCTTAAATCATATGATAAAAGTAGGCTTCCTCCGGGGTGGTTGGATTGCCCTTCATTTGGCCAGGAAATTTGTTGCATGATACCTTCTAAGGTTCCTCTTGGTGAATCATTCAATGATTGCATTGCTCCTGGTAAAAGATACTCATTTAAACAAGTGATACATCAACAGAGAGTTTTAGGGAGGAAACTTGGTCTGGTGATTGATTTGACAAATACTTCTCGATACTATCCAGTGTCAGATTTGAAGAAGGAGGGTATCAAGCATGTTAAGATTCAATGCAAAGGGCGTGATTCTGTACCTGATAATTTATCTGTGAACCAGTTCGTCTACGAGGTCATACAATTTTTGTCACGCCAAAAACACTCAAAGAAGTATATACTTGTTCATTGTACACATGGGCATAATCGTACGGGATACATGATCATCCATTATCTAATGCGTGCTATGTCAATGTCTGTTACTCAGGCAATAAAAGTTTTTTCTGAAGCACGCCCTCCGGGAATCTACAAACGTGATTATATTGATGGGTTGTACGCATTTTATCATGAGAAAAAGCCTGAAATGGTAATGTGTCCTCCTACTCCGGAGTGGAAAAGATCTTCTGAACTTGATCTCAATGGTGAAGCAGTTCCAGATGATGATGATGATGGAGTACCAGGCCCTGATTTGCAGGACAACCATGAGACAGACACACGAATGACAAATGATGATGTTTTAGGAGATGAGATACCTACCGATCAGCAAGATGCATTTCGGCAGTTCTGTTATCAAACACTTAAATTGGGTGTTGGGGCCAGAGGACACACACAATTTCCTGGTTCACACCCAGTTTCTCTCAACAGGGATAATTTGCAGTTATTACGGCAACGATATTATTATGCAACGTGGAAGGCTGATGGTACACGATATATGATGCTAATAACAATGGATGGGTGTTACTTGATTGATAGAAATTTTAATTTTCGAAGGGTCCAAATGAGGTTTCCTTGCAGGGGTACAAATGATGGTTTGGGTGAGAAGACCCACCACTTCACATTACTTGATGGTGAGATGGTTATTGATACCTTGCCAGATTCACAGAAGCAGGAGAGAAGATACCTTATATATGATCTGATGGCAATCAACCAAGTATCAATAATAGAGCGACCCTTCTCTGAAAGGTGGAAGATGCTTGAGAAAGAAGTGATTGAACCTAGGAATCAGGAACGACAGTTTATATACCAGAGCAGAAATCCTTACTACAGATATGACCTGGAACCATTCAGGGTGAGGAGGAAAGATTTTTGGTTGCTCTCGACTGTCACAAAGCTTTTAAAGGAATTCATTAAAAGACTCTCACATGAGGCTGATGGTCTCATATTTCAGGGCTGGGACGATCCTTATGTACCCCGTACTCATGAAGGACTCTTAAAGTGGAAATATGCAAATTTGAATTCAGTTGATTTTCTCTTTGAGGTTGATGGTGATCATGAGCTACTTTTTCTCTATGAACGGGGAAAAAAGAAACTCATGGATGGAAATAGGGTTGCATTCAGAGATGGTTCAGATCCCTCACTTTATTCCGGAAAGATCATAGAGTGTTCTTGGGATTTTGATAATCAGGAATGGATATATATGCGAATCAGGACAGATAAATCAACTCCAAATGAATTTAATACTTACAGGAAGGTGATGCGAAGCATAAAAGACAACATCACAGAGGAAGACTTGTTGAATGAAATAAATGAGATAATTCGCCTTCCCATGTATGCCGACAGGATAAAAATGGATAGCAAAGCAAATCAGCACGCTAATGTTGCAAGGCGAAGGTGA 2052 0.4064 MIVAMDLNASPVPEEDEDTFEEKIHVEEYTAPEERIETGADIARREREERKRRLKRERSDDRPVHVSQSPGYDQLFHAKNLKSYDKSRLPPGWLDCPSFGQEICCMIPSKVPLGESFNDCIAPGKRYSFKQVIHQQRVLGRKLGLVIDLTNTSRYYPVSDLKKEGIKHVKIQCKGRDSVPDNLSVNQFVYEVIQFLSRQKHSKKYILVHCTHGHNRTGYMIIHYLMRAMSMSVTQAIKVFSEARPPGIYKRDYIDGLYAFYHEKKPEMVMCPPTPEWKRSSELDLNGEAVPDDDDDGVPGPDLQDNHETDTRMTNDDVLGDEIPTDQQDAFRQFCYQTLKLGVGARGHTQFPGSHPVSLNRDNLQLLRQRYYYATWKADGTRYMMLITMDGCYLIDRNFNFRRVQMRFPCRGTNDGLGEKTHHFTLLDGEMVIDTLPDSQKQERRYLIYDLMAINQVSIIERPFSERWKMLEKEVIEPRNQERQFIYQSRNPYYRYDLEPFRVRRKDFWLLSTVTKLLKEFIKRLSHEADGLIFQGWDDPYVPRTHEGLLKWKYANLNSVDFLFEVDGDHELLFLYERGKKKLMDGNRVAFRDGSDPSLYSGKIIECSWDFDNQEWIYMRIRTDKSTPNEFNTYRKVMRSIKDNITEEDLLNEINEIIRLPMYADRIKMDSKANQHANVARRR* 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00934 683 MobiDBLite consensus disorder prediction 1 20 - -
Rops4g00934 683 ProSiteProfiles ATP-dependent DNA ligase family profile. 437 581 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Rops4g00934 683 Gene3D DNA ligase/mRNA capping enzyme 314 553 - -
Rops4g00934 683 Gene3D Protein tyrosine phosphatase superfamily 65 284 IPR029021 -
Rops4g00934 683 Coils Coil 40 60 - -
Rops4g00934 683 ProSitePatterns Tyrosine specific protein phosphatases active site. 208 218 IPR016130 GO:0016311|GO:0016791
Rops4g00934 683 Gene3D - 592 660 IPR012340 -
Rops4g00934 683 FunFam mRNA capping enzyme family protein 552 660 - -
Rops4g00934 683 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 89 278 IPR029021 -
Rops4g00934 683 PANTHER MRNA-CAPPING ENZYME 84 665 - -
Rops4g00934 683 FunFam mRNA capping enzyme family protein 85 299 - -
Rops4g00934 683 MobiDBLite consensus disorder prediction 300 319 - -
Rops4g00934 683 MobiDBLite consensus disorder prediction 25 70 - -
Rops4g00934 683 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 317 554 - -
Rops4g00934 683 SMART dsp_5 123 263 IPR020422 GO:0006470|GO:0008138
Rops4g00934 683 CDD RNA_5'-triphosphatase 92 258 - -
Rops4g00934 683 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 186 255 IPR000387 GO:0016311|GO:0016791
Rops4g00934 683 PIRSF mRNA_capping_HCE 75 683 IPR017074 GO:0004484|GO:0006370|GO:0140818
Rops4g00934 683 FunFam mRNA capping enzyme, putative 314 551 - -
Rops4g00934 683 Pfam mRNA capping enzyme, C-terminal domain 582 651 IPR013846 -
Rops4g00934 683 SUPERFAMILY Nucleic acid-binding proteins 556 668 IPR012340 -
Rops4g00934 683 ProSiteProfiles Dual specificity protein phosphatase domain profile. 116 267 IPR020422 GO:0006470|GO:0008138
Rops4g00934 683 MobiDBLite consensus disorder prediction 25 64 - -
Rops4g00934 683 MobiDBLite consensus disorder prediction 285 322 - -
Rops4g00934 683 Pfam mRNA capping enzyme, catalytic domain 355 553 IPR001339 GO:0004484|GO:0005524|GO:0006370
Rops4g00934 683 Pfam Dual specificity phosphatase, catalytic domain 141 261 IPR000340 GO:0008138|GO:0016311
Rops4g00934 683 CDD Adenylation_mRNA_capping 343 554 IPR001339 GO:0004484|GO:0005524|GO:0006370
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00934 Rops-Chr4 24320154 24341580 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00934 1 683 Protein tyrosine phosphatase (PTP) family AT3G09100 68.940 0.0 951
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00934 K13917 - gmx:100776633 1283.47