Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00920 ATGAAGCTACTTGGCAAGGCAGGAGAGATAACCTCTCTAGAGGCTCCCGACGATGAGAGCATCAAAACTCTTTACGTTGGTGGACCTGATGCCAGGGTCACTGAGCAGGATTTGCGCGATCACTTCTATGCCCATGGAGAAAGTGAGTCCATCAAAATGGTTCTCCAACGGGCTTGTGCTTTTATAACCTATACAACCAGAGAAGGTGTAGAAAAGGCAGCAGAAGAACTTTCTAATAAACTAGTTATTAAGGGCCTAAGGCTAAAGCTGATGTGGGGCGGGCCTCAGTCATCAAAACTGAGTCCGATGGCTCTGATCAAGCCAGGCAGCAGGCATCTGTGGCTCATAGTGGATTGTTGCCTCGAGCGGTTATATCACAGCAGCTGA 387 0.4858 MKLLGKAGEITSLEAPDDESIKTLYVGGPDARVTEQDLRDHFYAHGESESIKMVLQRACAFITYTTREGVEKAAEELSNKLVIKGLRLKLMWGGPQSSKLSPMALIKPGSRHLWLIVDCCLERLYHSS* 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00920 128 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 22 95 IPR000504 GO:0003723
Rops4g00920 128 PANTHER PRE-MRNA-SPLICING FACTOR RBM22 1 97 IPR039171 GO:0003723
Rops4g00920 128 Gene3D - 23 93 IPR012677 -
Rops4g00920 128 CDD RRM_RBM22 21 93 - -
Rops4g00920 128 FunFam Zinc finger CCCH domain-containing protein 4 8 102 - -
Rops4g00920 128 SMART rrm1_1 23 91 IPR000504 GO:0003723
Rops4g00920 128 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 24 83 IPR000504 GO:0003723
Rops4g00920 128 SUPERFAMILY RNA-binding domain, RBD 10 97 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00920 Rops-Chr4 24058040 24058426 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00920 14 83 Eukaryotic Initiation Factors Gene Family AT1G49760 30.667 3.76e-06 43.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00920 K12872 - gmx:100779917 179.874