Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00893 ATGGAACCGGAAGAAGCCACCGCCGTGGCAGCCACGGCGGACCCCGACGGAAGCGGCGACGAGGGGTTGGTCGGGTCAGGCGGCAACGGCAACGTCAGAGATAGAGTGAAGGGTCCTTGGTCTCCAGAAGAGGACTCCATTCTGAGCTGTCTCGTGAGCAAGTTCGGTGCCAGAAACTGGAGCCTCATAGCTCGTGGGATCTCCGGAAGATCCGGCAAGTCGTGCCGGCTCCGGTGGTGCAATCAGCTCGACCCAGCTGTGAAGCGTAAGCCCTTCACCGGTGCGTAA 288 0.6181 MEPEEATAVAATADPDGSGDEGLVGSGGNGNVRDRVKGPWSPEEDSILSCLVSKFGARNWSLIARGISGRSGKSCRLRWCNQLDPAVKRKPFTGA* 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00893 95 MobiDBLite consensus disorder prediction 1 42 - -
Rops4g00893 95 CDD SANT 39 81 IPR001005 -
Rops4g00893 95 ProSiteProfiles Myb-like domain profile. 32 83 IPR001005 -
Rops4g00893 95 SMART sant 36 85 IPR001005 -
Rops4g00893 95 PANTHER MYB PROTEIN-RELATED 37 93 - -
Rops4g00893 95 FunFam MYB transcription factor 37 88 - -
Rops4g00893 95 Gene3D - 36 88 - -
Rops4g00893 95 Pfam Myb-like DNA-binding domain 37 83 IPR001005 -
Rops4g00893 95 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 34 87 IPR017930 -
Rops4g00893 95 SUPERFAMILY Homeodomain-like 38 93 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00893 Rops-Chr4 23570865 23571152 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00893 32 93 MYB Transcription Factor Family AT3G55730 75.806 7.60e-30 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Rops4g00893 Myb_DNA-binding 6.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00893 K09422 - gmx:100813406 133.265