Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00892 ATGAAATGTTGTTGCAAGGTCAAGTGCAAAGATGAGGAGGACCGGATCATAGTTGCTGCTCATGCAATCCATGGGAACAAATGGGCAGCTATCGCCAGGCTTCTACCAGGAAGAACAGATAATGCCATTAAAAACCACTGGAATTCTACTTTGAGGCGTCGGGGAGTTGAACATGATAAGATGAAGTTAGAATCTGGTAACATAGGGGAAGATATTAGCTTGGACAAAGCCAAAGCATCATCTGAAGACACTCTATCATGTGGAGATGTTAATTCCTTGAAATCCTCAGAAGGAAGAGATGTCAGTTCTATGGAGATCACGGATGATAAATATGAAGACAAAGCTCAGCCTGAGGGTCAATTATACCATGAAGTGAGGGATCCACCTACCCTTTTTCGCCCAGTAGCACGTGTAAGTGCTTTTAACGTATATCACTCTTTCAATGGTTCACAAGCTTCAACATCAATTCAAAGACCTGTTCCAGCGCAAGGACCCATTTTTCAATCATCTAAACCAGATATTGAATTTTGTAAAATGTTTGAAGGAATTTATGGTGACCAGGCAGTGCCTCACCAGTGCGGCCATGGATGCTGTGTTGCTCCAGATGGTAAAAACTCGAAAAGCTCTTTGTTGGGACCAGAATTCATTGAATTTTCAGAACCCCCATCTTTCCCAAGTTTTGAGTTGGCTGCAATAGCTACAGACATTAGTAACCTTGCTTGGCTTAAAAGTGGATTGGAGAATAGTAGTGTCAAAATGATGGGTGACACCACTGGAAGGGTAATATCTAATGGATCTCAAGTACATAGTGGCCATTAG 819 0.4212 MKCCCKVKCKDEEDRIIVAAHAIHGNKWAAIARLLPGRTDNAIKNHWNSTLRRRGVEHDKMKLESGNIGEDISLDKAKASSEDTLSCGDVNSLKSSEGRDVSSMEITDDKYEDKAQPEGQLYHEVRDPPTLFRPVARVSAFNVYHSFNGSQASTSIQRPVPAQGPIFQSSKPDIEFCKMFEGIYGDQAVPHQCGHGCCVAPDGKNSKSSLLGPEFIEFSEPPSFPSFELAAIATDISNLAWLKSGLENSSVKMMGDTTGRVISNGSQVHSGH* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00892 272 Gene3D - 10 54 - -
Rops4g00892 272 SMART sant 5 53 IPR001005 -
Rops4g00892 272 CDD SANT 11 51 IPR001005 -
Rops4g00892 272 MobiDBLite consensus disorder prediction 84 105 - -
Rops4g00892 272 MobiDBLite consensus disorder prediction 84 100 - -
Rops4g00892 272 PANTHER MYB PROTEIN-RELATED 10 109 - -
Rops4g00892 272 Pfam Myb-like DNA-binding domain 11 50 IPR001005 -
Rops4g00892 272 ProSiteProfiles Myb-like domain profile. 11 51 IPR001005 -
Rops4g00892 272 SUPERFAMILY Homeodomain-like 11 53 IPR009057 -
Rops4g00892 272 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 55 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00892 Rops-Chr4 23547728 23550618 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00892 13 272 MYB Transcription Factor Family AT3G09230 48.175 8.93e-77 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Rops4g00892 Myb_DNA-binding 8.9e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00892 K09422 - gmx:100811740 439.113