Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00888 ATGATTCCAAAGTTGGACTTGAAAGAAGTCTTCATTCAATATGTACAAGCCGTGTCAGATGATGACATTCAAACAGCAATGTTGGAGGATCCAAGAGCAAAGTTTGAATCATCAGGGAGTCTAATCAACGAATCCTTGAAGTGTGAACAACCAACAGGCCAAGAACTGTTGAGTTATATGCACCTCTTGTATCAGGTTTGCCCATATTGGAAGTTTGCTTACACATCTGCAAATGTTGTCATCGGAGAAGCAATGCAAGACGAATCAAGAATTCATATAATTGACTTCCAAATTGCTCAGGGCACACAATGGTTATTACTTATCAAAGCTCTTGCATGTCGTCCAAGTGGACCTCCATTCATTCGTGTAACCGGCGTTGATGATTCCCAATCATATCGTGCTCGGGGTGGAGGACTTCATATTGTAGGAAAACGGCTCTCAGATTATGCCAAGTCTTGTGGAATACCATTTGAGTTCCATAGTGCTCCCATGTCGGGCTGTGAGGTTGAACCGGAAAACCTTGTAGTCTTACCTGGGGAAGCTCTGGCTGTGAATTTCCCTTTCATTTTGCACCATATGCCGGATGAGAGTGTGAGCACAGAGAATCATAGAGACAGGCTATTGAGATTGGTAAAGAGCTTGTCACCAAAGGTGGTGACCCTTGTTGAGCAAGAATCCAACGCTTCCTTGTTTACAACTAACTGTGATTCGCAGAAGTTCACCCAACCATCGTGGCTTTTCTTCTCTACTGTGCATGCCACACGAATCATCTTGTGTTGA 780 0.4359 MIPKLDLKEVFIQYVQAVSDDDIQTAMLEDPRAKFESSGSLINESLKCEQPTGQELLSYMHLLYQVCPYWKFAYTSANVVIGEAMQDESRIHIIDFQIAQGTQWLLLIKALACRPSGPPFIRVTGVDDSQSYRARGGGLHIVGKRLSDYAKSCGIPFEFHSAPMSGCEVEPENLVVLPGEALAVNFPFILHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVEQESNASLFTTNCDSQKFTQPSWLFFSTVHATRIILC* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00888 259 ProSiteProfiles GRAS family profile. 1 259 IPR005202 -
Rops4g00888 259 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 46 234 IPR005202 -
Rops4g00888 259 Pfam GRAS domain family 35 228 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00888 Rops-Chr4 23496099 23496878 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00888 1 229 GRAS Transcription Factor Family AT4G17230 59.684 2.69e-105 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Rops4g00888 GRAS 4.2e-60 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00888 - - gmx:100817987 370.548