Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00882 ATGGGGGCTCGTTGCTCTAAATTCTCCTTCTGCTGGTTCCATTCCCACCTCAAACCTTCTGTCCTTGAATCCTCTGACCAAGAAAATGGTGGCAAGGGTGAAAGAAACTTGTGTCCAAGTTTTGATGAGTTTAGCTTGGAAGAACTAAAGGCTGCCACAAATGGATTCTCCTCAGAAAACATAGTCTCTGAGCATGGTGAGAAAGCTCCCAATGTTGTTTACAAAGGGAAACTTGAGAACGGACAGTGGATCGCCATCAAACGTTTCAACAAGTTCGCTTGGCCTGATCATCGCCAATTCCTAGAAGAAGCCAGACAAGTGGGGAGCCTTAGAAGTGAACGTTTGGCAAATTTGATTGGTTGTTGCTATGAAGGGGATGAAAGGCTGCTAGTAGCAGAGTTTATGCCACATGAAACTCTGGCTAAGCATCTCTTTCATTGGGAGGCACAGCCCATGAAATGGGCAATGAGGTTGAGGGTGGCTTTCTACTTAGCTCAAGCTCTAGAATATTGCACCAGTAAAGGAAGGGGTTTGTATCATGATCTCAATGCCTACAGGATCTTGTTTGATCAGGATGGAAATCCCAGGTTGTCTTGCTTCGGGCTCATGAAGAACAGCAGAGATGGCAAGAGTTACAGTACAAACTTGGCTTTCACCCCTCCTGAGTACTTAAGGACTGGTAGAGTGACACCAGAGAGTGTGGTTTATAGTTTTGGAACCCTGTTGCTGGATCTCTTGAGTGGTAAACATATTCCACCAAGCCATGCACTTGACCTGATACGTGGCAAAAACTTTTTGATGTTGATGGATTCGGCCTTAGAGGGTCACTTTTCAAAGGATGATGGAACTGAGTTGGTTCGTTTTGCTTCCCGTTGTTTACAGTATGAAGCTCGTGAGAGGCCAAATGCAAAGTCTCTTGTTGCATCTCTTATGTCACTTCAAAAGGAAACAGAGGTTCCCTCCTATGTTTTGATGGGTCTCCGGCTTGAAACTGCATCCTCAACAAAGCCATTGTCATTGACACCTTTTGGTGAAGCTTGTTTGAGACCGGATCTTACTGCCATACATGAAATATTAGAGAAGACTGGTTACAAGGATGATGAAGGAATTGCCAATGAGCTTTCCTTTCAATTGTGGACCAGTCAAATGCAGGAGACCTTGAATTTGAAGAAGCATGGTGATACTGCTTTTCGAGCTAAGGACTTTGTCACTGCCATTGACTGCTACACGCAATTCATAGATGGAGGGACCATGGTGTCACCTACAGTGTATGCAAGGCGCTGCTTATCTTATTTGATGAATGACATGCCACAAGAAGCTTTGGGAGATGCTATGCAAGCTCAAGTGGTGTCTCCTGAGTGGCCTACTGCTTTGTATCTTCAAGCAGCTTGTCTTTTCAGACTCGGAATGGAAAATGATGCACAAGAAACTCTCAAAGATGGGACTAACATGGAAGCCAAAAAACACAAAAATTGA 1476 0.4438 MGARCSKFSFCWFHSHLKPSVLESSDQENGGKGERNLCPSFDEFSLEELKAATNGFSSENIVSEHGEKAPNVVYKGKLENGQWIAIKRFNKFAWPDHRQFLEEARQVGSLRSERLANLIGCCYEGDERLLVAEFMPHETLAKHLFHWEAQPMKWAMRLRVAFYLAQALEYCTSKGRGLYHDLNAYRILFDQDGNPRLSCFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTPESVVYSFGTLLLDLLSGKHIPPSHALDLIRGKNFLMLMDSALEGHFSKDDGTELVRFASRCLQYEARERPNAKSLVASLMSLQKETEVPSYVLMGLRLETASSTKPLSLTPFGEACLRPDLTAIHEILEKTGYKDDEGIANELSFQLWTSQMQETLNLKKHGDTAFRAKDFVTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPEWPTALYLQAACLFRLGMENDAQETLKDGTNMEAKKHKN* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00882 491 Gene3D Tetratricopeptide repeat domain 383 491 IPR011990 GO:0005515
Rops4g00882 491 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 20 490 IPR045845 GO:0004672|GO:0009742
Rops4g00882 491 Pfam Protein tyrosine and serine/threonine kinase 72 310 IPR001245 GO:0004672|GO:0006468
Rops4g00882 491 FunFam probable serine/threonine-protein kinase At4g35230 384 491 - -
Rops4g00882 491 Gene3D Phosphorylase Kinase; domain 1 32 134 - -
Rops4g00882 491 FunFam probable serine/threonine-protein kinase At5g41260 136 327 - -
Rops4g00882 491 Gene3D Transferase(Phosphotransferase) domain 1 136 328 - -
Rops4g00882 491 SUPERFAMILY TPR-like 387 480 IPR011990 GO:0005515
Rops4g00882 491 SUPERFAMILY Protein kinase-like (PK-like) 37 320 IPR011009 -
Rops4g00882 491 ProSiteProfiles Protein kinase domain profile. 59 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g00882 491 FunFam probable serine/threonine-protein kinase At4g35230 31 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00882 Rops-Chr4 23437660 23442363 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00882 19 310 Glycoside Hydrolase AT3G07070 33.438 3.01e-41 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Rops4g00882 PK_Tyr_Ser-Thr 2.2e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00882 - - gmx:100814477 949.503