Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00859 ATGGGTGGTGTTGCATGGACAGAAGAAGAAGATCACCTCCTTAAGAAATGCATACAACAATATGGAGAAGGAAAGTGGCATCGCATGCCTCACTTGGCTGGTCTAAACAGGTGCCGAAAAAGCTGTAGGCTAAGATGGCTGAACTATCTCCGTCCCAACATCAAAAGAGGAAATTTTACTGACGAAGAAGTGGAAATGATCGTCAAACTCCATAAATTATTGGGCAACAGGTGGTCACTTATTGCCGGAAGGTTACCAGGAAGGACAGCCAATGATGTGAAGAACTATTGGAACTGCCATCTGAGTAAAAAATTAAATGCTCAAGAAGCTGAACAGAGACACATGGTCATAAACGTTGATGTTATTAAGCCCCAGCCTAGAAACATTGCTCCAAGCTCAGTCAAGAAAATGAGCCAGGGGGAGTCACCAAATGACCCACCAGCTCCACATGAGAGTGGCATCTCCTTGCCCACAGTTGATGGTGATAGACAGAGCCTGATGCTTGAATTAGAGGAAGACAATATATGTTCATGCTTGGACCCACAAGGCATTGTTGGTGTGTTGCCAATGGACTTTCAGTTTGATGAAGTCAAAGCAATGAGTAATGGACAGGGTAGCAGCCAGTGGGATTGGGATGACTTGCTTTTTGACATGGACCTGTGCAATGATTCTTCTTTTAGCTTCTAG 687 0.444 MGGVAWTEEEDHLLKKCIQQYGEGKWHRMPHLAGLNRCRKSCRLRWLNYLRPNIKRGNFTDEEVEMIVKLHKLLGNRWSLIAGRLPGRTANDVKNYWNCHLSKKLNAQEAEQRHMVINVDVIKPQPRNIAPSSVKKMSQGESPNDPPAPHESGISLPTVDGDRQSLMLELEEDNICSCLDPQGIVGVLPMDFQFDEVKAMSNGQGSSQWDWDDLLFDMDLCNDSSFSF* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00859 228 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 5 127 - -
Rops4g00859 228 Gene3D - 58 121 - -
Rops4g00859 228 SUPERFAMILY Homeodomain-like 5 97 IPR009057 -
Rops4g00859 228 ProSiteProfiles Myb-like domain profile. 6 50 IPR001005 -
Rops4g00859 228 SMART sant 55 103 IPR001005 -
Rops4g00859 228 SMART sant 2 52 IPR001005 -
Rops4g00859 228 FunFam Myb transcription factor 3 55 - -
Rops4g00859 228 Pfam Myb-like DNA-binding domain 56 98 IPR001005 -
Rops4g00859 228 Pfam Myb-like DNA-binding domain 5 50 IPR001005 -
Rops4g00859 228 Gene3D - 4 55 - -
Rops4g00859 228 ProSiteProfiles Myb-like domain profile. 51 101 IPR001005 -
Rops4g00859 228 MobiDBLite consensus disorder prediction 129 158 - -
Rops4g00859 228 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 50 IPR017930 -
Rops4g00859 228 CDD SANT 58 101 IPR001005 -
Rops4g00859 228 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 51 105 IPR017930 -
Rops4g00859 228 CDD SANT 5 50 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00859 Rops-Chr4 22983719 22985561 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00859 5 130 MYB Transcription Factor Family AT1G66370 60.584 3.08e-56 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops4g00859 Myb_DNA-binding 1.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00859 K09422 - gmx:100798101 320.472