Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00838 ATGGGTGGAAGCCACTTTCTCTACCTCTCCCTCTCCCTCTCTCGTTGGTGCTGCCTTCACTTTGTGATTCTCGCACAGAAGCATATATATTTAGCAAATATGGCAGTCACATTATACGACCTTAGCTCTGATTTTGGGTTGAAGAAGCTTGATGAGTACCTTCTCCCACGCAGTTATATCACTGGGTACCAAGCTTCAAAGGATGATGTTACTGTTTATGCAGCTTTGAAAACTGTTCCATCTGATGCATATGTGAATGTGTCCAGGTGGTACAAGCACATTGATGCTTTGTTGAGAATATCTGGTGTTTCTGGTGAGGGATCTGGTGTCACCGTGGAGGGATCTTCTCTGGTGTCAGATGTGACTGTTGCCACTCCCCCAGCTGCTGACACAAAGGCTACTGCAGCTGAGGACGATGATGATGATGTGGATTTGTTTGGTGAAGAGACTGAGGAAGAGAAGAAGGCAGCTGAAGAACGGGCAGCTGCCGTCAAGGCAGCTGGCAAAAAGAAGGAGAGTGGGAAATCATCTGTTCTGTTGGATGTGAAGCCATGGGATGATGAGACTGACATGAAAAAGCTTGAAGAAGCAGTGAGATCTGTTCAGATGGAAGGGTTGCTCTGGGGTGCATCCAAACTTGTTCCTGTTGGGTACGGCATCAAGAAAATGACAATTATGCTTACTATTGTGGATGACCTAGTCTCTGTCGACACTCTTATTGAGGAACATCTTACAGTTGAGCCCATCAATGAATATGTCCAGAGTTGTGACATTGCGGCCTTCAACAAAATATTTAACACAGTATCCAACAAAATGCACTCTAGGAGTTTAGGTTCCAACATGTCGTCAAAAGTGACTATTGAGCCTGCCGGTTCTGAAACTGTCGTGAAGTTGGTGCTATCACCAAGACTAGGCCAAGGAGGAGGGAAACATAAAGTTGGCACCGGTTTCCAAAGCATAGTATATACTCTCTTGCTCAGTAGAATTTATCTGGTTTGA 999 0.4515 MGGSHFLYLSLSLSRWCCLHFVILAQKHIYLANMAVTLYDLSSDFGLKKLDEYLLPRSYITGYQASKDDVTVYAALKTVPSDAYVNVSRWYKHIDALLRISGVSGEGSGVTVEGSSLVSDVTVATPPAADTKATAAEDDDDDVDLFGEETEEEKKAAEERAAAVKAAGKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLVPVGYGIKKMTIMLTIVDDLVSVDTLIEEHLTVEPINEYVQSCDIAAFNKIFNTVSNKMHSRSLGSNMSSKVTIEPAGSETVVKLVLSPRLGQGGGKHKVGTGFQSIVYTLLLSRIYLV* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00838 332 SUPERFAMILY eEF-1beta-like 172 264 IPR036219 -
Rops4g00838 332 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 139 147 IPR001326 GO:0003746|GO:0005853|GO:0006414
Rops4g00838 332 Pfam EF-1 guanine nucleotide exchange domain 177 264 IPR014038 GO:0003746|GO:0006414
Rops4g00838 332 SMART EF1_GNE_2 175 264 IPR014038 GO:0003746|GO:0006414
Rops4g00838 332 FunFam Elongation factor 1-delta 1 36 111 - -
Rops4g00838 332 SUPERFAMILY GST C-terminal domain-like 44 100 IPR036282 -
Rops4g00838 332 CDD EF1B 173 264 IPR014038 GO:0003746|GO:0006414
Rops4g00838 332 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 2. 253 264 IPR001326 GO:0003746|GO:0005853|GO:0006414
Rops4g00838 332 FunFam Elongation factor 1-beta 1 like 169 264 - -
Rops4g00838 332 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 42 264 - -
Rops4g00838 332 Coils Coil 147 167 - -
Rops4g00838 332 Gene3D - 30 111 - -
Rops4g00838 332 Gene3D - 168 264 IPR014717 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00838 Rops-Chr4 22615037 22619405 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00838 40 264 Eukaryotic Initiation Factors Gene Family AT2G18110 79.204 8.74e-111 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00838 K03232 - gmx:100777627 316.235