Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00830 ATGGCTGAGGGTTTTGAAGCTTACCATGTCCCACAACAAAGTAGAAGAGATAAGCTAAGAGTTATTGTGGCTCAGAACCAACCGGGTCTAGTTGAACCTTCCACTACCCTTTCTTCTGGTTGTACAACTTTTCTTCCTTCTTTTGACCCTTCATTTGTTTCTTCTGATTTGTTATCGTGTGCAAATCAACAAGATCATAACTTCCATAACAGTCACCAGAACAACCAAGCTTCGAAATTGAACTTGGGTTGTGCAGTGAAGGAAGAACGTTCTAATTTGATGATGCGTTTTGGAGCAGCAGGAGGAGGAGGAGGAGGAGGGGTTATGAATGGTTCTTCTTCTTCTTCTTGTTCTAACTCTTCTTCACTTTCTCATCATGCTTACTTGGACCTTGAATCATCTTTGCCTTTGAACCCGGGTACAATTCAAGTTATAAACAACAACAACAACAACAACCCGTTTCTCTACCAAGTGCAAAATCAGAACCTTAGGGAGTTTGATTATAATAATGGCGGTGAAGAAATGAATATGGTGTTTAAGCCTGAGCCTTTGTCTTTGTCACTTTCATCACACAACAGTGTTAGTCACCCGCTAGAACTGAATCTTCAGCGATATGGGTCTGTGATTTATGGTGATAAGGTTGTTAGTGTTGGTGGTGGATGTGTGATTCCGGGTTTGGTTGGAGGAGTCGGAGCTTCTGGGCCATTTACTGGTTATGCTTCTGTGTTGAGAGATTCGAGGTTCTTAAAGCCTGCACAACAATTATTGGAAGAGATATGTGATGTTGGGGGTCTTGGAGTTTGTGCTGAGAAGGTTGTGGTGGTAGCTGATGCATCGTTAATGGAGGTTCCTCCTGATAGCTTGAGTGAAGATCCACTTGCAGATCATGGGAGAGAGGGTCACAAGAAGTCAAGGCTATTGACTTTGCATGATGAGGTTTACAGGAGGTACAGGCAATACTATCAACAGATGCAAGCAGTAGTAACATCATTTGAGTATGTCTCAGGCCTCAGCAATGCTGCTCCATATGCAAGTTTGGCAATAAAAGCCATGTCCAAACATTTTAGATGCTTGAAGAATGCAATTACTGACCAGCTTCAGTCCACCAATAAGGCTCATTTGCACATAAGCAACAGGAAGGATGAGTCTCCAAGGTTTGGCAACAGTGATAGGGGTCCTTACAGCCAAAGGTTGGGGTTTCTTGAGCACCAACCTGTTTGGCGACCTCAAAGAGGACTCCCCGAGCGTGCTGTGACTGTTCTTAGAGCATGGTTGTTTGAGCACTTTCTGCACCCTTATCCCACTGATACAGACAAGCTAATGTTGGCTAAACAAACTGGTCTATCTCGTAGCCAGGTGTCTAATTGGTTCATCAATGCAAGAGTAAGGCTCTGGAAACCAATGGTGGAAGAAATACACATGCTCGAAACACGACAAGCTCAGAAAAGTTCACTGAAAGAAGAACATTGTAGGAACAAGACAAGTGACCAATTGCCTTCAGATAATTCTCTTGCTTCTGAGAATCCATCTACCTCCACAGATAAATTTCAGGATGCCCCTTACAAGCACAATATAAATGAACTTCCTAATATACCAGTTAGGAATCATCAAGAACAAGTGAATGTGCCCTGCACAGGCAACAACCAGCAAGTAGGTGTTGGAGTGAGCATGGGTAGTGCAAGCAATAATGTGTCACTGACACTTGGTCTTTATCAAAATAATGGGATTGGGTTAGCTGAATCCTTTCCTTTAAATGAAGCTCAACGTTTTGGTCTTGGTATTGAAACCAGTAATGAAGGTTATGTTATGGGTGGTTTTGAGTCACAAAATAGGCATTTTGGAAGAGATGTTATGGGAGGGCAATTGTTGCATGACTTTGTAGGCTGA 1887 0.4271 MAEGFEAYHVPQQSRRDKLRVIVAQNQPGLVEPSTTLSSGCTTFLPSFDPSFVSSDLLSCANQQDHNFHNSHQNNQASKLNLGCAVKEERSNLMMRFGAAGGGGGGGVMNGSSSSSCSNSSSLSHHAYLDLESSLPLNPGTIQVINNNNNNNPFLYQVQNQNLREFDYNNGGEEMNMVFKPEPLSLSLSSHNSVSHPLELNLQRYGSVIYGDKVVSVGGGCVIPGLVGGVGASGPFTGYASVLRDSRFLKPAQQLLEEICDVGGLGVCAEKVVVVADASLMEVPPDSLSEDPLADHGREGHKKSRLLTLHDEVYRRYRQYYQQMQAVVTSFEYVSGLSNAAPYASLAIKAMSKHFRCLKNAITDQLQSTNKAHLHISNRKDESPRFGNSDRGPYSQRLGFLEHQPVWRPQRGLPERAVTVLRAWLFEHFLHPYPTDTDKLMLAKQTGLSRSQVSNWFINARVRLWKPMVEEIHMLETRQAQKSSLKEEHCRNKTSDQLPSDNSLASENPSTSTDKFQDAPYKHNINELPNIPVRNHQEQVNVPCTGNNQQVGVGVSMGSASNNVSLTLGLYQNNGIGLAESFPLNEAQRFGLGIETSNEGYVMGGFESQNRHFGRDVMGGQLLHDFVG* 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00830 628 Gene3D - 410 472 - -
Rops4g00830 628 SUPERFAMILY Homeodomain-like 409 474 IPR009057 -
Rops4g00830 628 CDD homeodomain 407 468 IPR001356 GO:0003677
Rops4g00830 628 FunFam BEL1-like homeodomain protein 9 410 472 - -
Rops4g00830 628 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 109 495 - -
Rops4g00830 628 Pfam Homeobox KN domain 424 463 IPR008422 GO:0003677|GO:0006355
Rops4g00830 628 MobiDBLite consensus disorder prediction 480 519 - -
Rops4g00830 628 SMART prehox3 237 364 IPR006563 -
Rops4g00830 628 SMART HOX_1 407 471 IPR001356 GO:0003677
Rops4g00830 628 ProSiteProfiles 'Homeobox' domain profile. 404 467 IPR001356 GO:0003677
Rops4g00830 628 MobiDBLite consensus disorder prediction 480 495 - -
Rops4g00830 628 Pfam Associated with HOX 242 363 IPR006563 -
Rops4g00830 628 MobiDBLite consensus disorder prediction 496 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00830 Rops-Chr4 22272083 22280318 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00830 177 628 Homeobox Transcription Factor Family AT5G02030 48.984 6.66e-114 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Rops4g00830 POX 1.6e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00830 - - gmx:100805512 833.172