Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00828 ATGGCTCAACCTTCAGGGCGGAGCAGGGTGGTTGGAGACTACGTGGTGGGGAAGCAAATCGGCGCTGGTTCGTTCTCTGTGGTGTGGCATGGAAGGCACAAGGTTCATGGAACCGAAGTGGCTATTAAAGAGATCGCCACGCTTCGACTCAACAAGAAGTTGCAAGAGAGTCTCATGTCTGAGATTTTCATCTTGAAGCGAATTAACCATCCTAATATTATTGGTTTGCATGATATCATTCAGGCCCCTGGGAAGATACATCTTGTGTTAGAGTACTGCAAAGGGGGAGACCTCTCTATGTACATTCAACGTCATGGAAGGGTACTGGAGGCAACTGCAAAGCATTTTATGCGGCAGCTGGCTGCTGGCCTACAAGTTCTTCGAGACAATAACCTTATTCATCGAGACCTGAAACCACAGAATCTTCTTCTCTCCCAAAATGATGAGAAGTCAGTGCTGAAGATTGCTGACTTTGGATTTGCAAGATCTCTGCAACCTAGGGGTCTTGCAGAAACCTTATGTGGTTCACCACTCTACATGGCTCCAGAAATCATGCAACTACAGAAGTATGATGCTAAGGCAGATCTCTGGAGTGTTGGTGCAATCTTATTTCAGCTTGTTACAGCAAGAACACCTTTTACTGGAAACAATCAGATACAGTTACTACAGAATATTATGAAATCAACAGAATTGCAATTTCCATCTGATAACCAAAGTCTGAGTTCTGACTGCAAAGATTTGTGTCAGAAATTGCTACGCCGTAATCCAGTGGAACGTCTGACTTTTGAAGAATTCTTTAACCACCCATTCCTTTCTCAGAAGCTAACAGAACAGGATGAGCCATTGAGGAATAGGAGTTCTTCAAGGATGGTAGGTGGCTTTTGTTCAACAGTGTCTGACCCTTTGAGAAGAACCGAGGAAAATTATCAAGAGGATTGCTTACCTTTCATTCTAGATGATGATTCTAGTTGCCCTGAAGGGAGTCCATCCTTTTCGAGGAAGAAATCCTCAATGAAGTCTACCTATGGATTTGATCTAAATGCAAAATTAGATAAAGCAGAGTCAGCATCTTCTATTTCCAGTAACGTAAATTGTGCTTCAAGATATGGTAATGTAACACAGAGACCTGAAAACACCATTAAAAAATTGGACAACCATAAAATTTTGGGAAGAAATCTTACTGATCCTCTAGATTCTCCAGAACAGATATTTGCAAACCCTTATCCAAAAGTTACGGATTCACTAGAGAATATTGATCAAGATTATGTTCTTGTGTCTGGGCCCCCTATGGATGTTTCATCTTCTTCAATTAATGCTTCAAAGCCCAGCCATCCCCTATATAGGTCAGGTAGTCAGGACTCGGCTCCTGGGACTTCGCATGGATCAATGGATACGGGTGATGAGCAGCCATCAGCTCACTGCATGACAAGGGTAAAATCATTGCAACAGTGTGCATCTGCCATCAAAGAATTAGTTAATGAAAAGATGGAGGCAGGAAAGCAGCTAGAAGCATTTTCTATTCAGCTTGTAATTCTTGCTATTTGGAAGCAAGCATTGCACATATGCCATACACAGGCTGCCTCAGCCATGGAAGGAAGTCCAAATCAAGAAGCTTCAAGATATAGGAGGAGCACCAGCAAGAAGCATGGTAGTCCTGATTCAGAAGAATTCCTTGATGGAAACACCCAAGGGCCAAAGTATATATTATCTCTAATAGAAAGTGAGTTTTTGAGGGAATTTGAGCATGCTGAAGAACTCGCAAAGAATATTGAGCCTGGAAATACGGAGATGCCAGATGCAATGGAGACAATATTTCAAGCTGCCCTTTCTTTTGGGAGACATGGGGGTGTAGAAGAGCTCATGGGTGACATGAAAAGTGCAGCTGCATTGTATTCAAAAGCTGTCCGTCTGTTGGTTTTCCTTCTTGTAGAAGGACCATCCCTGATTCTTAATCCTCCATTTTCACTGACAAACACCGACCGTTACAGGCTTCGGAATTACATTGATATTCTTAATAACAGGCAAGGTTATTCAAAGTCTCAGCGAATGACACTTCTGAAATGTGATGATAGTCAAGGTATCCTTAAGGAGAAGTTTTAG 2100 0.4229 MAQPSGRSRVVGDYVVGKQIGAGSFSVVWHGRHKVHGTEVAIKEIATLRLNKKLQESLMSEIFILKRINHPNIIGLHDIIQAPGKIHLVLEYCKGGDLSMYIQRHGRVLEATAKHFMRQLAAGLQVLRDNNLIHRDLKPQNLLLSQNDEKSVLKIADFGFARSLQPRGLAETLCGSPLYMAPEIMQLQKYDAKADLWSVGAILFQLVTARTPFTGNNQIQLLQNIMKSTELQFPSDNQSLSSDCKDLCQKLLRRNPVERLTFEEFFNHPFLSQKLTEQDEPLRNRSSSRMVGGFCSTVSDPLRRTEENYQEDCLPFILDDDSSCPEGSPSFSRKKSSMKSTYGFDLNAKLDKAESASSISSNVNCASRYGNVTQRPENTIKKLDNHKILGRNLTDPLDSPEQIFANPYPKVTDSLENIDQDYVLVSGPPMDVSSSSINASKPSHPLYRSGSQDSAPGTSHGSMDTGDEQPSAHCMTRVKSLQQCASAIKELVNEKMEAGKQLEAFSIQLVILAIWKQALHICHTQAASAMEGSPNQEASRYRRSTSKKHGSPDSEEFLDGNTQGPKYILSLIESEFLREFEHAEELAKNIEPGNTEMPDAMETIFQAALSFGRHGGVEELMGDMKSAAALYSKAVRLLVFLLVEGPSLILNPPFSLTNTDRYRLRNYIDILNNRQGYSKSQRMTLLKCDDSQGILKEKF* 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00828 699 FunFam Serine/threonine-protein kinase ATG1 6 312 - -
Rops4g00828 699 Gene3D Transferase(Phosphotransferase) domain 1 5 313 - -
Rops4g00828 699 SUPERFAMILY Protein kinase-like (PK-like) 9 283 IPR011009 -
Rops4g00828 699 CDD STKc_ATG1_ULK_like 20 270 - -
Rops4g00828 699 Pfam Protein kinase domain 14 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g00828 699 ProSitePatterns Protein kinases ATP-binding region signature. 20 43 IPR017441 GO:0005524
Rops4g00828 699 FunFam Aurora kinase A 7 96 - -
Rops4g00828 699 Coils Coil 488 508 - -
Rops4g00828 699 MobiDBLite consensus disorder prediction 433 466 - -
Rops4g00828 699 MobiDBLite consensus disorder prediction 433 472 - -
Rops4g00828 699 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Rops4g00828 699 SMART serkin_6 14 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g00828 699 PANTHER SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED 3 606 IPR045269 GO:0004674|GO:0006914
Rops4g00828 699 MobiDBLite consensus disorder prediction 527 562 - -
Rops4g00828 699 MobiDBLite consensus disorder prediction 541 555 - -
Rops4g00828 699 ProSiteProfiles Protein kinase domain profile. 14 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00828 Rops-Chr4 22131077 22138220 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00828 10 271 CBL-interacting serine-threonine protein kinases AT2G30360 37.313 1.69e-53 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-3 Rops4g00828 Pkinase 1.3e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00828 K08269 - gmx:100791596 1235.32