Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00824 ATGGAAATGACAGCTTATCAGCTTCAATACTACTTGGCTACTACTCATAGCAAGTGCATCAAAATGTTTCGGGGCTTGATTCTCCTATTGGCACTATCCAGCTCAGTTGCATCAAATGCCACAGTCAAGACCTTACCAGGCTTCACTGGTGAGCTACCATTCCAACTTGAAACTGGGTACATTGGTGTTGGAGAGCTAGATGAGGTTCAGCTTTTTTATTACTTCATTGAATCGGAGGAGAAGCCAGCAATTGATCCACTTGTGCTTTGGCTCACTGGAGGCCCTGGTTGCTCAGCTTTGTCAGGTCTCATGTATGAAATTGGTCCAATAGGTTATGACTACGAAAGGTCTCTCGATGGACACAAACCAGTTTTAGTGTTGAACGACAACTCCTGGACTAAGGTTGCCAACATTATTTTCTTGGATGCGCCGGTTGGCACTGGATTTTCATATGCAACAACTTCAGCAGGATACAACACTAGTGATACAAAATCAACTGAACACATTTATATGTTTCTAAGAAAGTGGCTTCTGTCTCACCCAAAATTTCAAACAAATCCTGTTTACATTGCTGGCGATTCTTATTCCGGGATCACTGTTCCAGTCATTGTGAAGAAAATTTCTGATGGTAACAAAGTTGGACACTTACCACGAATCAATCTCAAAGGTTATGTTCTAGGAAACCCATTAACAGATGAAAAATATGATATAAACTCAAGGGTTAAGTTTGCCCACAGAGTTGCACTTCTATCTGATGAACTCTATGAGGAAACTAAATTGGATTGTCAAGGAGAGTATGTTCACCCAAATAAAAGTAATGCTGGATGTATTGAGCATCTTGAGATAGTCAATCTGTGCCTCGAAGACATAAACCGTGCTATGATATTGGAACCAAATTGTGGTGATCTCTCTGCAAATCCCAACAAGCTTAAGTGGGGTTCAAGCAATCTTGGAGTTGATGTCTCAGATGCACTCCTTTTGGAAGTTAATCCAATTGGGCCATGGTGTAGGGAATACAATTATTTGTTCATCAACATCTGGGCCAATGACAAAGAAGTACAAGAAGCTCTGCATGTTAGAAATGGGACTATACAAGAGTGGGATAGATGTAATAAAAGCTTATCTTATGTGTATGACATAACAAGTAGCCTTGATTATCACCCAAATTTCACCAGCGAAGACCTTAGAGCTATCATTTACAGTGGAGATCATGACATGGTTATTCCATACGTGGGCACCGAGGAATGGATTCAATCTCTGAATTTGACTGTTTCTTCTGATGATGAGTGGAGACCATGGTTTCTGGATGGACAAGTTGCAGGTTATACAGAGATATACAGAGAGAAAAAGTACAGCATAACATTTGCTACTGTAAAGGGAGGAGGCCACACAGCTCCAGAGTACAAGCCCAAGCAATGCTTTAACATGATTAGTAGGTGGTTTGCTTATTACTTTCTTTAG 1461 0.4066 MEMTAYQLQYYLATTHSKCIKMFRGLILLLALSSSVASNATVKTLPGFTGELPFQLETGYIGVGELDEVQLFYYFIESEEKPAIDPLVLWLTGGPGCSALSGLMYEIGPIGYDYERSLDGHKPVLVLNDNSWTKVANIIFLDAPVGTGFSYATTSAGYNTSDTKSTEHIYMFLRKWLLSHPKFQTNPVYIAGDSYSGITVPVIVKKISDGNKVGHLPRINLKGYVLGNPLTDEKYDINSRVKFAHRVALLSDELYEETKLDCQGEYVHPNKSNAGCIEHLEIVNLCLEDINRAMILEPNCGDLSANPNKLKWGSSNLGVDVSDALLLEVNPIGPWCREYNYLFINIWANDKEVQEALHVRNGTIQEWDRCNKSLSYVYDITSSLDYHPNFTSEDLRAIIYSGDHDMVIPYVGTEEWIQSLNLTVSSDDEWRPWFLDGQVAGYTEIYREKKYSITFATVKGGGHTAPEYKPKQCFNMISRWFAYYFL* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00824 486 FunFam Serine carboxypeptidase-like 19 35 306 - -
Rops4g00824 486 FunFam Carboxypeptidase 335 485 - -
Rops4g00824 486 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 42 470 IPR001563 GO:0004185|GO:0006508
Rops4g00824 486 Gene3D alpha/beta hydrolase 35 484 IPR029058 -
Rops4g00824 486 ProSitePatterns Serine carboxypeptidases, histidine active site. 453 470 IPR033124 GO:0004185
Rops4g00824 486 SUPERFAMILY alpha/beta-Hydrolases 41 482 IPR029058 -
Rops4g00824 486 Pfam Serine carboxypeptidase 46 481 IPR001563 GO:0004185|GO:0006508
Rops4g00824 486 PRINTS Carboxypeptidase C serine protease (S10) family signature 453 466 IPR001563 GO:0004185|GO:0006508
Rops4g00824 486 PRINTS Carboxypeptidase C serine protease (S10) family signature 141 151 IPR001563 GO:0004185|GO:0006508
Rops4g00824 486 PRINTS Carboxypeptidase C serine protease (S10) family signature 176 201 IPR001563 GO:0004185|GO:0006508
Rops4g00824 486 PRINTS Carboxypeptidase C serine protease (S10) family signature 128 140 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00824 Rops-Chr4 22043307 22049496 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00824 347 482 Calmodulin-binding Proteins AT2G22960 51.471 8.61e-43 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00824 K16296 - jre:108983123 631.328