Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00821 ATGACATCTAAACCTAACCATGGAGATGAATTCAATGGTCATGGTGCACCAAAGCCAATCCACTTTTTCAGGATCATGTGCCCTGAAACCCTTTTGCAGGAAAAGCTAAGGATTCCAGGAAAGTTTGTGAGGAAATATGGAAAATGCTTATCCAACACAATGTTTCTTAAACTTCCAAATGGTGCAGAATGGAAAGTAAGTGTGGAGAAACATGATGGTGGAATTTGGTTTCATGAAGGTTGGAAAGAGTTTGTAGAGTATTACTCTCTAGCCCATGGACACTTATTGGTTTTTAGATATGATGGAGGAATATCTCATTTTCATGTGCTCATCTGTGATCTGAGTACCATGGAAATAGATTACCCTTTCAACAAGGTAGATAGAAAAAGGACTAAAAATAGTGAACTTCAACCATGTAAGATGCAGATAACAAGTGGAAACACCAAAGATGAGAGTATGCTGAAGAATCCAAGTGAAGAGAAGAAAAACACTGACCAACAAACTAAAGGGTGGTCCATTAGTAATTGTGGTGAAGTTGCTAGCAATACTTCCTTCACAGTGATAATAAAGTCATACCACTTAAAGAGAGACTTGTACCTGCCAAGGGGAACACTACAGGGCTACATCAAAACTGGTGGACAAAATGTTATGCTGCTGGTTGGTGACAAATCATGGAGGGTTAATTTGACCCATTACCAAAACCATTCAATAACTTTCCTTTCTGCAGGTTGGTTAATATTTGCAAAGGAAAACAATTTAGAAGTAGGAGATGCTTGCTTGTTTGAGCTGCTAAATTGTAGTGATGACATGGTGATAAAGGTTTCCATTTCCAGAGTTATTAAGCTGGCATTAACTTAA 858 0.3811 MTSKPNHGDEFNGHGAPKPIHFFRIMCPETLLQEKLRIPGKFVRKYGKCLSNTMFLKLPNGAEWKVSVEKHDGGIWFHEGWKEFVEYYSLAHGHLLVFRYDGGISHFHVLICDLSTMEIDYPFNKVDRKRTKNSELQPCKMQITSGNTKDESMLKNPSEEKKNTDQQTKGWSISNCGEVASNTSFTVIIKSYHLKRDLYLPRGTLQGYIKTGGQNVMLLVGDKSWRVNLTHYQNHSITFLSAGWLIFAKENNLEVGDACLFELLNCSDDMVIKVSISRVIKLALT* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00821 285 MobiDBLite consensus disorder prediction 147 169 - -
Rops4g00821 285 Gene3D - 16 116 IPR015300 -
Rops4g00821 285 ProSiteProfiles B3 DNA-binding domain profile. 21 115 IPR003340 GO:0003677
Rops4g00821 285 Pfam B3 DNA binding domain 22 113 IPR003340 GO:0003677
Rops4g00821 285 Pfam B3 DNA binding domain 185 273 IPR003340 GO:0003677
Rops4g00821 285 ProSiteProfiles B3 DNA-binding domain profile. 183 280 IPR003340 GO:0003677
Rops4g00821 285 SUPERFAMILY DNA-binding pseudobarrel domain 17 114 IPR015300 -
Rops4g00821 285 CDD B3_DNA 21 113 IPR003340 GO:0003677
Rops4g00821 285 Gene3D - 157 281 IPR015300 -
Rops4g00821 285 PANTHER B3 DOMAIN-CONTAINING 17 266 - -
Rops4g00821 285 SMART B3_2 185 277 IPR003340 GO:0003677
Rops4g00821 285 SMART B3_2 22 115 IPR003340 GO:0003677
Rops4g00821 285 SUPERFAMILY DNA-binding pseudobarrel domain 182 274 IPR015300 -
Rops4g00821 285 CDD B3_DNA 185 278 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00821 Rops-Chr4 21974042 21975313 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00821 105 282 B3 DNA Binding Superfamily AT3G18990 26.316 5.81e-10 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Rops4g00821 B3 4.8e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00821 - - aprc:113849508 345.51