Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00820 ATGAGTTCTGAACCTAAATATGGAGATGGCTGCAATGGTGGTGATAGTACATTAAAGCCAATCCACTTTTTCAGGATCATGCATGCTGAAACCCTTTTGCAGGGAAAGCTAAGGATTCCAGGAAAGTTTGTGAGGAAATATGGAAAATGCTTGTCCAACACAATGTTTCTTAAACTTCCAAACGGTGCAGAATGGAAAGTAAGTGTGGAGAAAATTGATGGTGGAGTTTGGTTTCATAAAGGTTGGAAAGAGTTTATGGAGTATTACTCTCTAGCCCATGGACACTTATTGGTTTTCAGATATGATGGAACATCTCATTTTCATGTACTCATATGTGGTTTGAGTACCATGGAAATAGACTACCCTTTCAACAAGCTAGATCAGAAAAGGACTTACAATAGTGAACTTCAACTATGTAAGAGGCTGAGAACAAGTGGAAACACCAAAGATGAGAGTAATTCTAATTTGCAAGACTGCAAAGGCATGTTGAAGAATCCAAATGAAGAGAAGAAAAACAGTGACCAGCATACTGAAAGGTCATCCATTAGTAACTGTGGTGAAGCTGCTGACAGTACTTCTTTCATGGTGATAATAAAGTCACACCACTTAAAGTGGAGCTTGAAACTGCCGAATGGAACACTGAAGGGCTATATCAAACCAGGTCGTCATAATAATGTTATGCTGATGGTTGGGGACAAACCATGGAGGGTTAATTTGATCCATAAACCAAACCATTCACCTACTATTTCTGCAGGGTGGTTAAGATTTGCAAGGGAAAACAATTTAGAAGTAGGAGATGCTTGTTTGTTTGAGCTGCTAAACAGTAGTCATGAAATGGTGATGAAGGTTTTCATTTATAAAGGCTCTTCTGTTAAGTCATAA 882 0.3855 MSSEPKYGDGCNGGDSTLKPIHFFRIMHAETLLQGKLRIPGKFVRKYGKCLSNTMFLKLPNGAEWKVSVEKIDGGVWFHKGWKEFMEYYSLAHGHLLVFRYDGTSHFHVLICGLSTMEIDYPFNKLDQKRTYNSELQLCKRLRTSGNTKDESNSNLQDCKGMLKNPNEEKKNSDQHTERSSISNCGEAADSTSFMVIIKSHHLKWSLKLPNGTLKGYIKPGRHNNVMLMVGDKPWRVNLIHKPNHSPTISAGWLRFARENNLEVGDACLFELLNSSHEMVMKVFIYKGSSVKS* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00820 293 CDD B3_DNA 193 284 IPR003340 GO:0003677
Rops4g00820 293 ProSiteProfiles B3 DNA-binding domain profile. 233 289 IPR003340 GO:0003677
Rops4g00820 293 Gene3D - 167 289 IPR015300 -
Rops4g00820 293 CDD B3_DNA 22 112 IPR003340 GO:0003677
Rops4g00820 293 Gene3D - 16 116 IPR015300 -
Rops4g00820 293 SMART B3_2 194 286 IPR003340 GO:0003677
Rops4g00820 293 SMART B3_2 23 115 IPR003340 GO:0003677
Rops4g00820 293 PANTHER B3 DOMAIN-CONTAINING 17 275 - -
Rops4g00820 293 MobiDBLite consensus disorder prediction 146 161 - -
Rops4g00820 293 Pfam B3 DNA binding domain 197 284 IPR003340 GO:0003677
Rops4g00820 293 Pfam B3 DNA binding domain 25 112 IPR003340 GO:0003677
Rops4g00820 293 MobiDBLite consensus disorder prediction 146 183 - -
Rops4g00820 293 ProSiteProfiles B3 DNA-binding domain profile. 22 115 IPR003340 GO:0003677
Rops4g00820 293 SUPERFAMILY DNA-binding pseudobarrel domain 19 113 IPR015300 -
Rops4g00820 293 MobiDBLite consensus disorder prediction 163 177 - -
Rops4g00820 293 SUPERFAMILY DNA-binding pseudobarrel domain 192 286 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00820 Rops-Chr4 21970122 21972190 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00820 103 287 B3 DNA Binding Superfamily AT3G18990 23.810 2.52e-09 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Rops4g00820 B3 4.4e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00820 - - aprc:113849508 350.517