Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00810 ATGGAACAGGGTCAATGTTGGATGCAAACAAAGAAGAGATACTCTGTGAGCTCCAATTTTATTTCACCAACTAACCCTTCTTCCTATGGTGAATCATGGGAAGAACAAGCTTTTGCAGAAGATGCAGCTGGGTCTCTTGGTGGCTGCATATGGCCACCAAGATCATATTCTTGCAGCTTCTGTAGAAGAGAGTTCAGGTCAGCACAGGCACTAGGTGGCCATATGAATGTTCATAGAAAAGATAGAGCAAGATTAAAGCAACCCTCTAGCCCCCAGAATGAAATTCTATATCATGGCCTTGAAACTCACCTCAACAAGCCTATTCAAAGTCCTTTTACAACATCCTTGGGTTACCTATACCCTTCTCCTGCCCTTGGATTGGCTTATAAAACTAACCCTAATTCTGATCCTGATCTTCTTGCTTCACCTTCATCACCCTCACCTTCCAAGGCTTTATCTCGATCAGTCAATGGAAACTGCAAAGAGGAAACCCTGATTCCACTTTGTAATTCATCTATTCTCCAGAAAATTACCCCTGTCAATTCTTCTCAATCATGGTCAAATTTAGTTGGAGATCACAGATTACATTCACGTAAGTTCCACCCTGAAATTGATATTGAAAAAGTCTCCAAGGGAATGGATTCTAGGTGTAGAGGTAATAAGGAGGATAATGATGATAATATTGATGTTACTATGAGCTTGAATTCGGTTGTGTGTAAAGCTCACCCACCTGTGCAGTTTGAGACTAAAGAGGCAGATATCAGTTGCAAGAAGAGGAAAATAGATTCTTCCTCAAATCTAATTTTCCCAAAGTCAAGCTCTGTTTATAAGCATCATATGCAACCCCAGATGTTTGAATTTAGCCCTAGCTCCATTGAAGAGCTAGATCTGGAGTTAAGGCTTGGTAACAGGTCCAAGGTATAG 924 0.4091 MEQGQCWMQTKKRYSVSSNFISPTNPSSYGESWEEQAFAEDAAGSLGGCIWPPRSYSCSFCRREFRSAQALGGHMNVHRKDRARLKQPSSPQNEILYHGLETHLNKPIQSPFTTSLGYLYPSPALGLAYKTNPNSDPDLLASPSSPSPSKALSRSVNGNCKEETLIPLCNSSILQKITPVNSSQSWSNLVGDHRLHSRKFHPEIDIEKVSKGMDSRCRGNKEDNDDNIDVTMSLNSVVCKAHPPVQFETKEADISCKKRKIDSSSNLIFPKSSSVYKHHMQPQMFEFSPSSIEELDLELRLGNRSKV* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00810 307 MobiDBLite consensus disorder prediction 136 156 - -
Rops4g00810 307 SUPERFAMILY beta-beta-alpha zinc fingers 53 82 IPR036236 -
Rops4g00810 307 SMART c2h2final6 56 78 IPR013087 -
Rops4g00810 307 Gene3D Classic Zinc Finger 53 103 - -
Rops4g00810 307 ProSiteProfiles Zinc finger C2H2 type domain profile. 56 83 IPR013087 -
Rops4g00810 307 Pfam C2H2-type zinc finger 56 80 - -
Rops4g00810 307 PANTHER OS07G0101800 PROTEIN 27 304 - -
Rops4g00810 307 ProSitePatterns Zinc finger C2H2 type domain signature. 58 78 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00810 Rops-Chr4 21726745 21727668 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00810 1 89 C2H2 Transcription Factor Family AT5G06070 59.574 1.83e-27 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops4g00810 zf-C2H2_6 1e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00810 - - gmx:100801427 395.971