Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00798 ATGAAGGAGAGACAACGTTGGAAAGCTGAAGAGGACGCTTTGTTATGTGCTTATGTCAAGCAGTATGGTCCTAGGGAATGGAATCTTGTGTCTCAGCGCATGAACACACCTCTTAACAGGGATGCAAAGTCATGCTTAGAAAGATGGAAGAACTACCTCAAGCCTGGAATCAAGAAAGGATCTCTTACTGAAGAAGAGCAGCGCCTTGTCATCCGCCTTCAAGCGAAACACGGCAACAAGTGGAAAAAAATTGCTGCAGAAGTTCCGGGTCGCACTGCTAAGAGGCTAGGAAAGTGGTGGGAAGTGTTCAAGGAGAAACAGCAAAGAGAAAAACAGGAGATTAACAAAACATTTGGCCCAGTTGATGACAACAAATATGATCACATACTAGAGACTTTTGCAGAGAAACTAGTGAAAGAGCAACCTTCACCATCATATATTATGGCTGCTTCTAATGGATCCTTTCTTCACACTGATGCACCTGCCCCTGCATCAGCTTTGCTTCCTCCTTGGCTTTCAAATCCGAATAACAATCAAGCCGCAATTGTGCCACCTTCCCCTTCCGTGACACTAAGTCTCTCTCCCTCAACTGTGACAGCACCTCCTCTCTCAACTGTGACAGCACCTCTTCCGTGGAGAGGACCGGAGAATGCACCTCTTGTTTTGGGAAATGTAACACCTCATAGATCTGTAACAACTTTCGGTGATAACGTGCTCATGTCTGAGTTAGTGGAGTGCTGTAAAGAGTTGGAAGAAGTGCATCGTGCTTGGGCGGCCCATAAGAAGGAGGCATCCTGGAGGCTAAGAAGGGTGGAGTTGCAGTTGGAGTCAGAGAAGGCAAGTCGACGGAGGGAGAAGATGGAAGAAATGGAAGCAAAGATAAAAGCTCTTAGGGAAGAACAGAATGCTGCTTTGGAAAGAATTGAAGCAGAGTATAGGGAACAGTTAACTGGATTGAGGAGAGATGCAGAAACCAAAGAACAGAAATTGGCTGAGCAATGGACTGCAAAGCACTTGCGACTTGTGAAGTTCATGGAGCAGGTAGGATGCAGAGCCCGGCTTGCTGAGCCTAATGGAAGATAA 1083 0.4635 MKERQRWKAEEDALLCAYVKQYGPREWNLVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQRLVIRLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREKQEINKTFGPVDDNKYDHILETFAEKLVKEQPSPSYIMAASNGSFLHTDAPAPASALLPPWLSNPNNNQAAIVPPSPSVTLSLSPSTVTAPPLSTVTAPLPWRGPENAPLVLGNVTPHRSVTTFGDNVLMSELVECCKELEEVHRAWAAHKKEASWRLRRVELQLESEKASRRREKMEEMEAKIKALREEQNAALERIEAEYREQLTGLRRDAETKEQKLAEQWTAKHLRLVKFMEQVGCRARLAEPNGR* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00798 360 SMART sant 3 55 IPR001005 -
Rops4g00798 360 SMART sant 58 106 IPR001005 -
Rops4g00798 360 SUPERFAMILY Homeodomain-like 4 98 IPR009057 -
Rops4g00798 360 Gene3D - 4 58 - -
Rops4g00798 360 ProSiteProfiles Myb-like domain profile. 54 104 IPR001005 -
Rops4g00798 360 CDD SANT 6 53 IPR001005 -
Rops4g00798 360 Coils Coil 268 333 - -
Rops4g00798 360 Gene3D - 62 120 - -
Rops4g00798 360 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 54 108 IPR017930 -
Rops4g00798 360 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 1 355 - -
Rops4g00798 360 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 53 IPR017930 -
Rops4g00798 360 Pfam Myb-like DNA-binding domain 7 67 - -
Rops4g00798 360 CDD SANT 63 104 IPR001005 -
Rops4g00798 360 FunFam MYB-related transcription factor 4 58 - -
Rops4g00798 360 ProSiteProfiles Myb-like domain profile. 1 53 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00798 Rops-Chr4 21388483 21391730 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00798 1 351 MYB Transcription Factor Family AT2G37630 67.213 6.63e-166 466
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops4g00798 Myb_DNA-bind_6 8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00798 K09422 - zju:107430642 517.694