Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00792 ATGGGAAGGAAGATCCATGACAAACATTCTGATTCATATTGGCACAATAATAATCAAGGGTGCAGTAGTAGTCTTTTTCATATTGTTAAGCGCCATCCCTTGCGTCATTTCATGAAAAGACTTGCATATAGGAAGGTTGGTGGTGGAGAAAGAAGTGCTGCAGGAACTGTACCTGCATTAAGAGGTGAAGCCTTAGCTGACAAAAAGAAGGACCATAACCATGCTGAGACAAGAAACTCACATGTTGAAAAGGTGACACCATATTCTTCAGTTGCAAAAAACTCAGTAAGGAGCCAGATAAAAGCAATTATCAAAGATATATCTAAGAAGAGAAGACATCGTAGAAGTTCAACCTGCCCTCATTTGTCTCAATCAATCCATACTACATCAACTCATGATATGGAGCAATCAAATATTGACCCCTTTTCTGAAACAGTTCTAACTGATGAAAGTACTAGAATTAAAAGATGTGTACAATGTGGTGCTACACATGGTGGTGATTACTGGGAGTATAATTTGGTTGGCAAGCATCAACCAATAAAAAGAGATTTACTTGCACCAGAAGTCAAAAGAAAAAACCAATGTATAACGGAATCTAAGTTAACACATGCTAGAAAACACACATCTGGTACTTCCACTCAATTTTGCAAGCATTTTGTTAATGCTCTGGGTACAACCAACATGAACAAGGACTTATTATTAACATTTTTACAAGATCCAGTCTCTCCTTTGGCTTATCACTTCCATAAACAACAGGTGTGTAGCCGAAAAACGGCATTAACCAGGTCTGTATCATTTCCTTTACCTGACTCATCATCAAAAAGACGAGGTTTTGAGGCTACAGGCAATGGTTCTCTACCAAATGGGCAAGAAAAATCATGTTTTGGCAATAGAACACAAAATCCAGTTCAATTTGAATCCTCGAAAAAAATTTGTGAACAGGCCATGCCATCAGGATCAGCTCAGGATCAGAATCAGAAAGAAATCAAACACATTAAGAATCTCAAACAGAAAATAGAGCATGTAACTGGAGACAGTAGAAAAGAAAAGCTTCGTGTTACTATGGATGCTGTCATTCATAAACTTCCTCAAGGCCATGGCATATCAGATGACTTGAAGAAGGAAATTTTTAAGAAATTGACAGAGCCTAATATTACTAGAGAAAGTGAATACTGTTTTCCAAGTTGTAATCAGAGTGAACCCTCTACTCATTATTCCTTTCCCAGGCATCACAGGAACAGCATAAGAAGAATTCGGTCCCTTCAAGAACCACTAGAAAGTTATTATAATCTCCATGAAAATAGCTTTAACACAGAAGGGAGACACCTTCCATCTGAGCAAATAAAATTAAGAACAAAAAAGGCACATTCACCATTGAGGAAGCTGATACCCTTGAAAAGTATTCTTTCACTACCCGATCTCCAATCTTTTCCCTTTACTTATCAGAATGGGGATATTTCTGATATTTCATCTCTCACTGAGCCAACCATGGCTTCTGGGGATGGAACTATGAGTTCAGAGAGTGTTGCTTATCAGAAAAAGAGGCTTGACCCTAATGTAGATTCAGAAATTCAACTGCAGTTAGATACACCTGAGGAAAATTTGATTCAAGAGAACCTTGTAAGTGTAGGTGAAAATGATTCATTGATTAGTTATGTTGTGGGAACAGGATCAGATTATAGCAGTGATATTAATGGCAAAGTGGGCATAATAATTGGTGATTTTGGACACAGTAGTTTAGAAAACGGTGGCACTTTCAATGACCAAGATATTGAGTGCAAGGCTGCAATAGCATCACCAGATTCAAAATCTAAGCCAGGACCCATTGATAGACTGGATAATATGGCTGAGCCACAAGAGGCTAACATGGATTCCCTCAAAGTGACTGAGACCACAGAGAATGCTCAAAAAAGGAAGATTCTAACCAATGAGTTGAACTATGAGATTCCTCATAATCATGTGGACACCAGAGACAAAGCCGAGTTTAATTATGTAAAATATGTACTTGAGATATCTGGACTCACTGGTAATGATTGCCTTTCAGCATGGCATTCTAGTGACCAACCACTTGATCCATTACTTCATGAAGAAATGGAAGGTGATCCTGATTTCTGTACTTATGAAGCTGGTCAGTGTAATCACCATGTATTGTTTGATTTAATTAATGAGATATTGTTGGAAATTTATGGGAGGTCTTACTGCTACCATCCCAAACAATTGTCATCTCTTCCCCACATTCATCAAATGCCAGTAGGGTGCCACATTCTCCATCAAGTGTGGACTCATATAAGCAAGTCCATGTTCTTAAGATCCAAAGCTGGACAAACAATAGATGATCATTTAAGTAGAGATCTAGCAAAGCGTGATGGGTGGGTGAACCCTCAATTTTTTGCTCAGTGTTTGGGTTTGGAGGTAGAAGACTTGATTTTTCATGATCTCCTTGAGGAAATAATGTGGGACTTAGCTTGCTTCTGA 2475 0.3834 MGRKIHDKHSDSYWHNNNQGCSSSLFHIVKRHPLRHFMKRLAYRKVGGGERSAAGTVPALRGEALADKKKDHNHAETRNSHVEKVTPYSSVAKNSVRSQIKAIIKDISKKRRHRRSSTCPHLSQSIHTTSTHDMEQSNIDPFSETVLTDESTRIKRCVQCGATHGGDYWEYNLVGKHQPIKRDLLAPEVKRKNQCITESKLTHARKHTSGTSTQFCKHFVNALGTTNMNKDLLLTFLQDPVSPLAYHFHKQQVCSRKTALTRSVSFPLPDSSSKRRGFEATGNGSLPNGQEKSCFGNRTQNPVQFESSKKICEQAMPSGSAQDQNQKEIKHIKNLKQKIEHVTGDSRKEKLRVTMDAVIHKLPQGHGISDDLKKEIFKKLTEPNITRESEYCFPSCNQSEPSTHYSFPRHHRNSIRRIRSLQEPLESYYNLHENSFNTEGRHLPSEQIKLRTKKAHSPLRKLIPLKSILSLPDLQSFPFTYQNGDISDISSLTEPTMASGDGTMSSESVAYQKKRLDPNVDSEIQLQLDTPEENLIQENLVSVGENDSLISYVVGTGSDYSSDINGKVGIIIGDFGHSSLENGGTFNDQDIECKAAIASPDSKSKPGPIDRLDNMAEPQEANMDSLKVTETTENAQKRKILTNELNYEIPHNHVDTRDKAEFNYVKYVLEISGLTGNDCLSAWHSSDQPLDPLLHEEMEGDPDFCTYEAGQCNHHVLFDLINEILLEIYGRSYCYHPKQLSSLPHIHQMPVGCHILHQVWTHISKSMFLRSKAGQTIDDHLSRDLAKRDGWVNPQFFAQCLGLEVEDLIFHDLLEEIMWDLACF* 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00792 824 PANTHER PROTEIN TRM32 1 821 IPR044257 -
Rops4g00792 824 MobiDBLite consensus disorder prediction 65 81 - -
Rops4g00792 824 MobiDBLite consensus disorder prediction 119 136 - -
Rops4g00792 824 MobiDBLite consensus disorder prediction 65 84 - -
Rops4g00792 824 Pfam Protein of unknown function (DUF3741) 200 240 IPR022212 -
Rops4g00792 824 MobiDBLite consensus disorder prediction 107 136 - -
Rops4g00792 824 MobiDBLite consensus disorder prediction 266 299 - -
Rops4g00792 824 Pfam Domain of unknown function (DUF4378) 661 816 IPR025486 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00792 Rops-Chr4 21083069 21084535 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00792 653 810 TRM (TON1 Recruiting Motif) Superfamily AT5G02390 49.123 5.84e-45 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00792 - - lja:Lj0g3v0182349.1 799.66