Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00777 ATGGGAGGTGAACGAAGCTTTGTGATGAGTTCGAATAACAAGAAGAAGAAGAAGAATGCCAAATCCAAATCTGGGGGTTTTGAATCACTGGGTTTGAATCCCAATGTGTTCAAGGCAATCAGACGCAAAGGGTACAAAGTGCCCACTCCTATTCAGAGGAAGACCATGCCCCGCATCCTCTCTGGTTTCGATGTTGTCGCCATGGCTCGTACTGGCTCTGGCAAAACGGCAGCGTTTCTTATCCCCATGCTTCACCGCCTCAACCAGCATCTCCCTCAAGGTGGCGTCAGAGCCCTCATTTTATCCCCTACTAGGGACTTGGCCCTTCAAACTCTCAAGTTCACCAAAGAACTTGGTCACTTCACAGACCTTCGTGTTAGTTTGTTAGTTGGGGGTGATAGTATGGAGGGTCAGTTTGAGGAGTTAGCTCAGAGTCCTGACATTATAATTGCCACTCCCGGTAGGCTTATGCACCATTTGTCTGAGGTTGATGACATGTCCTTGCGCAGCGTCGAGTATGTTGTTTTCGACGAGGCAGATTGTTTATTTGGCATGGGTTTTGCTCAACAGTTGCACCAAATTCTTGCTCAGCTTGGTGAGAATCGTCAGACCTTGCTTTTCAGTGCTACCTTACCCAGTGCACTTGCTGAATTTGCCAAGGCTGGTTTGAGAGACCCTCAGCTTGTCCGCTTGGATTTAGAAACTAAAATTAGCCCTGACTTGAAGCTTGCCTTCTTCACTTTGAGGCAGGAAGAGAAGTATGCCGCATTGCTCTATTTGATCAGGGAGCATATTGCTTCTGATCAGCAGACTTTAATTTTTGTGTCCACTAAGCATCATGTGGAGTTTCTGAACTCGTTGTTTCGGGAAGAGGGTATTGAGCCGTCTGTGTGTTATGGTGACATGGATCATGATGCTCGGAAAATCCATGTGTCAAGGTTTAGGGCAAGGAAGACAATGTTGTTGATTGTGACTGATATCGCAGCTAGGGGCATTGACATTCCATTGCTTGATAATGTTATCAATTGGGACTTTCCTCCGAAGCCTAAAATATTTGTTCATCGAGTTGGAAGGGCCGCAAGGGCTGGTCGTACTGGCACCGCATATTCTTTTGTGACTTCAGAGGATATGGCTTACCTTTTGGATCTTCATTTGTTTCTCTCAAAACCAGTCAGAGCTGCTCCCACTGAAGAAGAGGTCTTGAGGGATATGGAGGGAGTAATGTCAAGAAATGACCAGGCAATAGCAAATGGAGAAACCATTTATGGTCGTTTCCCCCAAAAGGTCATTGACCTTGTTTCAGACAGAGTTAGGGAAATTATTGATACTTCTGCAGAGTTGCAATTGTTGCAGAGAACCTGTAAAAATGCATTTCGTTTATACTCAAAAACAAAACCCTTACCCGCAAAGGAGTCCATCAGAAGAGTAAAGGATTTGCCCCGTGAAGGGCTACATCCAATGTTCAAGAATGTGTTGGAAACAGGGGAGTTAATGGCACTTGCATTTTCTGAGCATTTGAAAAAGTTTAGGCCAAAGCAGACCATTTTGGAAGCTGAAGGGGAATCTGCTAAATCAAAGCATCTACAGGGCCCTTCTGGTCAATGGGTTGATGTGATGAAAAGGAAAAGAGCCATTCATGAGAATATTATAAATTTGGTTCATGAAAAGCATTCTAAGAGTAATTTGGAAAAGGAGGAAGTTCAATCGGAAATCACTCCATCTGTGAAGAAAGAGAGAAAAGCCGCATGTGGTTCTAAGAGAAAGTCACAAAGTTTCAAGGATGAGGATTACTATATAAGTTCAATACCTAAAAATCAACACATGGAAGCAGGCCTTTCGGTAAAGGCTAATGAAGACTTTACTTCAAATAGATTGGAAGCAGCTGTCCTGGATCTAGTAGCAGATGATGGTGCTGGCCTTCAGAAACAAAGATCTGTATATCACTGGGATAAGAGGAGTAAAAAGTACATCAAGTTAAATAACGGTGACCGTGTTGCTGCAAATGGAAAGATAAAAACAGAGAGTGGGGCAAAAACGAAGGCCACCAAGACTGGTATATATAAAAAGTGGAAAGAACGCTCACACGGTAAGATATCTCTTAAAGGAACAAATGCTGATGGTGAAGCTCAGGAATCAACAAGCTTGACAGGATCTTACCGAGGAGGTCGTAGGAATTTTAGAGGTGGCAAGAAGCAGCATTCAATGCCCAATGCTCATGTGCGTTCAGAAATCAAAGATATGGATCAAATTCGAAAGGAGAGGCAGAAAAAAGCCAGCAGAATTTCTTATATAAAGAGCAAGTCAAAGGGTAAAAAATTTGGCAAAAATGGGAAAAAAAGAAAAGTCAAATAG 2352 0.4315 MGGERSFVMSSNNKKKKKNAKSKSGGFESLGLNPNVFKAIRRKGYKVPTPIQRKTMPRILSGFDVVAMARTGSGKTAAFLIPMLHRLNQHLPQGGVRALILSPTRDLALQTLKFTKELGHFTDLRVSLLVGGDSMEGQFEELAQSPDIIIATPGRLMHHLSEVDDMSLRSVEYVVFDEADCLFGMGFAQQLHQILAQLGENRQTLLFSATLPSALAEFAKAGLRDPQLVRLDLETKISPDLKLAFFTLRQEEKYAALLYLIREHIASDQQTLIFVSTKHHVEFLNSLFREEGIEPSVCYGDMDHDARKIHVSRFRARKTMLLIVTDIAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAYSFVTSEDMAYLLDLHLFLSKPVRAAPTEEEVLRDMEGVMSRNDQAIANGETIYGRFPQKVIDLVSDRVREIIDTSAELQLLQRTCKNAFRLYSKTKPLPAKESIRRVKDLPREGLHPMFKNVLETGELMALAFSEHLKKFRPKQTILEAEGESAKSKHLQGPSGQWVDVMKRKRAIHENIINLVHEKHSKSNLEKEEVQSEITPSVKKERKAACGSKRKSQSFKDEDYYISSIPKNQHMEAGLSVKANEDFTSNRLEAAVLDLVADDGAGLQKQRSVYHWDKRSKKYIKLNNGDRVAANGKIKTESGAKTKATKTGIYKKWKERSHGKISLKGTNADGEAQESTSLTGSYRGGRRNFRGGKKQHSMPNAHVRSEIKDMDQIRKERQKKASRISYIKSKSKGKKFGKNGKKRKVK* 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00777 783 Pfam DEAD/DEAH box helicase 49 216 IPR011545 GO:0003676|GO:0005524
Rops4g00777 783 Pfam Helicase conserved C-terminal domain 253 363 IPR001650 -
Rops4g00777 783 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 253 402 IPR001650 -
Rops4g00777 783 MobiDBLite consensus disorder prediction 1 27 - -
Rops4g00777 783 CDD DEADc_DDX54 25 230 IPR033517 -
Rops4g00777 783 SMART ultradead3 44 251 IPR014001 -
Rops4g00777 783 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 56 229 IPR014001 -
Rops4g00777 783 CDD SF2_C_DEAD 248 372 - -
Rops4g00777 783 SMART DBP10CT_2 631 693 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Rops4g00777 783 Pfam DBP10CT (NUC160) domain 631 692 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Rops4g00777 783 MobiDBLite consensus disorder prediction 736 760 - -
Rops4g00777 783 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 95 381 IPR027417 -
Rops4g00777 783 MobiDBLite consensus disorder prediction 705 720 - -
Rops4g00777 783 Gene3D - 244 465 IPR027417 -
Rops4g00777 783 SMART helicmild6 282 363 IPR001650 -
Rops4g00777 783 MobiDBLite consensus disorder prediction 697 783 - -
Rops4g00777 783 Gene3D - 4 232 IPR027417 -
Rops4g00777 783 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 11 696 - -
Rops4g00777 783 MobiDBLite consensus disorder prediction 761 783 - -
Rops4g00777 783 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 25 53 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00777 Rops-Chr4 20895385 20900734 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00777 19 396 Eukaryotic Initiation Factors Gene Family AT1G72730 32.105 1.21e-58 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00777 K14808 - gmx:100806274 1309.28