Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00741 ATGGACATGTATGGTTCACTTTCCAACCCTCCAAATTGCTTACACATTGATGGTTTTCTAGAATTTTCCAACAACCCCATCACCGCCGCCACCGATTCCCACCACCACCACCTTCCTCCGCCGCAACATCAATTCTCCGATGACATCAATTTCTTCAACGATTTCCCTTTTGTTCCCAGCGAAGAAGTAGCGGAACTAGAATGGCTCTCGCAATTCATTGACGACACGACGTCGTTTCATGACATCCCAGCGAATAACACCATTCCAATGGGACCCCTAACGACGTCGTTTCTCTCAAACAATCCGAAATCATCAGAGGCAATTCCTTCTTCATCTTCAGTCACCGGAAAATCGAGATCCAAGAGAGAGGCAAATGGAGGTTCACTGGCGGCGGTGACGGGAGACGGAGGTGTACGGAGGTGCAGCCACTGTGCATCGGAGAAGACACCGCAATGGCGAACTGGACCGTTAGGGCCAAAGACACTCTGCAATGCGTGTGGTGTGAGGTTCAAATCGGGTCGACTCGTACCCGAATATAGACCCGCTTCGAGCCCTACCTTTGTGCTGACTCAGCATTCAAACTCTCACCGGAAAGTCATGGAGCTCCGTCGCCAGAAGGAGCTGCTCCGTCAACAACAGCAGCAACAGCAAGAGCAATGTTACCGTCACAAGCATGATTTCAAAGTTTGCTGA 693 0.5051 MDMYGSLSNPPNCLHIDGFLEFSNNPITAATDSHHHHLPPPQHQFSDDINFFNDFPFVPSEEVAELEWLSQFIDDTTSFHDIPANNTIPMGPLTTSFLSNNPKSSEAIPSSSSVTGKSRSKREANGGSLAAVTGDGGVRRCSHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRLVPEYRPASSPTFVLTQHSNSHRKVMELRRQKELLRQQQQQQQEQCYRHKHDFKVC* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00741 230 CDD ZnF_GATA 140 187 IPR000679 GO:0006355|GO:0043565
Rops4g00741 230 ProSitePatterns GATA-type zinc finger domain. 141 166 IPR000679 GO:0006355|GO:0043565
Rops4g00741 230 FunFam GATA transcription factor 132 218 - -
Rops4g00741 230 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 139 199 - -
Rops4g00741 230 Gene3D - 138 186 IPR013088 GO:0006355|GO:0008270
Rops4g00741 230 PANTHER GATA TRANSCRIPTION FACTOR 105 216 - -
Rops4g00741 230 MobiDBLite consensus disorder prediction 93 122 - -
Rops4g00741 230 SMART GATA_3 135 185 IPR000679 GO:0006355|GO:0043565
Rops4g00741 230 MobiDBLite consensus disorder prediction 93 132 - -
Rops4g00741 230 ProSiteProfiles GATA-type zinc finger domain profile. 139 171 IPR000679 GO:0006355|GO:0043565
Rops4g00741 230 Pfam GATA zinc finger 141 174 IPR000679 GO:0006355|GO:0043565
Rops4g00741 230 Coils Coil 199 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00741 Rops-Chr4 19674589 19676310 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00741 34 216 C2C2-Gata Transcription Factor Family AT2G45050 51.327 8.50e-63 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Rops4g00741 GATA 8e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00741 - - gsj:114418730 276.559