Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00738 ATGTCCTGTCTTAACAGAGAGGAAAATGGAAATAATAACAGTAACAGTTTCGTTTGGTTTTCATCATGGGAACCCTCTACGTGTTCTAGCCTTGTTAACATCACCACCACTGCGGCGGAGAGCTCCGCCTCCAACCACCACCGGCAACAGCTACCTTTGTACGGTGGTGATGGATCCCACGTGCACCCTGACCCACATCTCACGTGTTTGTATTTAGGGAAGAGGCATTACTTTGAGGAAAATAATAATAATAATAATAATGTTGCTAATGGTGCTACTCCTCTGGGGGAGCGACAGGTGTGTGGTGGTGTTGGTGGGTTTGCTTCACAGGCTGGTAACAATAAGAGAGCTAAATCATTACTTGGGAGTGGTGGTGGTGGAGGTGGAGGTGGAGCTGCCGGTGGTGAAAAGACGGCGGCGATGGTGCCGAGGTGTCAGGTGGAGGGGTGCCACGTGGCACTGTTGAATGCCAAGGAGTATCACAGGAGGCACAAAGTTTGTGATATGCATTCCAAGGCACCCAATGTTGTGGTGTTAGGGTTAGAGCAGAGATTCTGTCAGCAATGTAGCAGGTTTCATGTGGTGTCAGAGTTTGATGATTCAAAGAGGAGTTGTAGGAGGAGACTGGCGGGTCATAATGAACGAAGAAGAAAGAGTTCTTATCATTCTGTTACTGGAAATTCTACACAAGGGTGTGCTCTCTCTCTTCTGTCAACTGGGAGTGATTCTTGGCTTTCTCATGCTGATCTCTCCACAAGATGCAGTGCAGCATTACGTGAATTGATAGCAGAAAACCGTGCTACCCTCATGACTAGACAACTTGTTCTCGATAGAGACTTGCATTTGCCCCACCATGCAGTTGAAGACTTTAAGGAGATACCAAATTATTTTCCACAACAAATGTTTCGCTAA 912 0.4682 MSCLNREENGNNNSNSFVWFSSWEPSTCSSLVNITTTAAESSASNHHRQQLPLYGGDGSHVHPDPHLTCLYLGKRHYFEENNNNNNNVANGATPLGERQVCGGVGGFASQAGNNKRAKSLLGSGGGGGGGGAAGGEKTAAMVPRCQVEGCHVALLNAKEYHRRHKVCDMHSKAPNVVVLGLEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSYHSVTGNSTQGCALSLLSTGSDSWLSHADLSTRCSAALRELIAENRATLMTRQLVLDRDLHLPHHAVEDFKEIPNYFPQQMFR* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00738 303 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 52 227 IPR044817 GO:0003677
Rops4g00738 303 FunFam Squamosa promoter-binding-like protein 14 136 206 - -
Rops4g00738 303 Pfam SBP domain 145 218 IPR004333 GO:0003677
Rops4g00738 303 SUPERFAMILY SBT domain 143 223 IPR036893 GO:0003677|GO:0005634
Rops4g00738 303 Gene3D - 136 206 IPR036893 GO:0003677|GO:0005634
Rops4g00738 303 ProSiteProfiles Zinc finger SBP-type profile. 142 219 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00738 Rops-Chr4 19546008 19551301 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00738 145 220 SBP-box Gene Family AT2G33810 71.053 1.38e-35 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Rops4g00738 SBP 2.4e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00738 - - gmx:100780159 352.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g00738 4 19546008 19551301 Rops4g00738 4 19546008 19551301 ECH