Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00701 ATGAATGAGGTGCCACCACCATCATCTACACAAGATGAAGGTGGCAACAAAGCCAACCAAAAAGTACCCTTTTACAAGTTATTCACTTTTGCGGATCAACTTGATGTGACATTGATGATCATTGGCACGATCTGTGCAATAGCTAATGGGGTGTCACAGCCACTCATGACTGTTATTCTTGGTAAGGTCATCAACACCTTTGGCTCCACGGATCCATCCAATACTGTAAAGGAAGTTTCTAAGGTTTCCTTATTATTTGTTTACCTGGCTCTTGGATCTGGAATGGCATCATTTCTACAGGTATCATGTTGGATGGTGACAGGAGAAAGACAAGCCGCAAGGATCCGTGGCTTGTACTTGAAAGCTATACTAAAGCAAGACATTGCCTTCTTTGACACCGAAACAACAACCGGAGAGGTAATTGGGAGAATGTCTGGTGACACCATTCTCATTCAAGATGCCATGGGAGAAAAGGTTGGGAAGTTTATTCAACTTGCTTCAGTTTTTGTTGGTGGCTTTGTGGTTGCCTTTATAAAAGGATGGAGACTTGCTGTAGTTTTGCTTGCATGCATGCCTTGTGTGGTATTAGCTGGTGCAGTCATGTCCATATTGATGGCTAAATTGTCAAGTAGAGGGCAAGCTGCTTATGCAGAAGCAGGAAATGTTGTTGACCAAACAGTGGGAGCCATTAGAACAGTTGCATCTTTCACTGGGGAGAAAAAAGCAATAGAAAAGTATAATAGCAAGTTAAAAGTTGCCTATAATTCAATGGTTCAACAAGGGATAGCCACAGGGTCATGTTTGGGAGTGCTTTTATTGATTATCTTCTGCACCTATGGACTTGCCATGTGGTATGGTTCCAAAATGGTTATCAAGGAAGGATATAATGGTGGAACCGTCATCAATGTAATCATAGCTCTCATGACTGGTGGAATGTCACTTGGTCAAACATCCCCAAGCCTCAATGCATTTGCTGCAGGCCAAGCAGCAGCATATAAGATGTTTGGGACAATTAAAAGAAAGCCTAAAATTGATGCTTATGACACAAGTGGTGTTGTCTTGGAAAGCATAAAGGGAAATATTGAACTCATAGATGTTTACTTCAGCTACCCTGCAAGGCGAGATGTGCAAATCTTTGCTGGATTCTCATTATCTGTTCCCAATGGCACAACTGCTGCTTTGGTGGGTCAAAGTGGAAGTGGGAAGTCCACTGTAATTAGTTTATTAGAAAGATTTTATGATCCTGATGCTGGAGAAGTACTTATAGATGGTGTGAATTTGAAGAGTTTTCAACTTAGATGGATAAGAGAACAAATTGGGTTGGTTAGTCAAGAACCTATCTTGTTTACAACTAGTATCAAAGAGAACATAGCATATGGGAAAGAAGGAGCAACTGATGAAGAGATAACAAGAGCAATAACACTTGCCAATGCCAAAAAGTTCATTGACAAGCTGCCTCAGGGCCTTAACACAATGGCAGGGCAAAATGGGACTCAACTTTCTGGTGGGCAAAAGCAAAGAATTGCAATTGCAAGGGCAATTTTGAAGAATCCAAGAATCCTTCTTCTTGATGAAGCAACAAGTGCATTGGATGTTGAATCTGAACGTATTGTTCAAGAAGCATTAGAAAATGTTATGTCAAAAAGGACTACTATAATTGTTGCACATCGTTTGACAACTATTAGAAATGCTGACACCATAGCAGTGGTTCATCAGGGCAAAATTGTGGAGAAAGGAACCCATGATGAGTTAATCAAGGATGTTGATGGTGCTTATTCTCAGCTTATTCGTCTACAAGAAGGAGAAAAGGAAGCTGAAAGTAGCCAGAAGTTAGAAGCAGATAAGACAAGTAACAATTTCAATTTAGATAGTCATTTGGCTAGATCTTCCACCCATAGAACATCCTTTGTGAGATCAATAAGTCAAAGTTCATCAAGGAGTCAACACTCCCAGACACTTAGCTTTGCTCTTCCTCATCAAAGTGGAGAAATAGAAAATGTGGATATTGAACAAAGTCAAGTTGACAATAAGAAGCCTAGAAAGGTTTCTATAATGCGTTTGGCATATTTAAACAAGCCTGAGGCTCCTATCTTACTATTTGGATCCATTGCTGCAATACTACATGGTTTAGTGTTCCCTATATTTGGCCTCTTGTTTTCATCAGCCATTACTATGTTCTTTAAACCTCCAGAACAGCAGCAGAAAGATTCAAAGTTCTGGGCACTTCTATATATGGGTTTAGGCTTAGTTACTCTAGTGGTTATACCATTGCAAAATTACTTCTTTGGAGTTGCTGGTGGAAAACTTATAGAAAGAATTCGTTCAATGACATTTGAAAAGGTTGTGCATCAAGAAATCAGTTGGTTTGATGACCCTGCAAATTCAAGTGGTGCAGTTGGTGCAAGATTATCTATTGATGCTTCAACAGTGAAAAGTCTTGTTGGTGATACATTGGCCCTCATTGTGCAAAACATATCAACAATTGTAGCAGGTCTAGTTATAGCATTCACTGCTAATTGGATTCTTGCTTTTATAATTCTGGCTGTGTCACCCTTGGTCCTTTTTCAAGGAGTTGCTCAGATGAAGTTTCTAAAAGGATTCAGTGCAGATGCCAAGATGACTTATGAAGAGGCAAGTCAGGTGGCAAATGATGCTGTCAGTGGCATAAGAACTGTTGCAACATTTTGTGCTGAGTCAAAGGTGATGGAATTGTACGAGAAGAAATGTGCAGGGGCAAAGACACAAGGTGTTCGCTTGGGGCTTATTAGTGGTGCTGGATTTGGTTTCTCTTTTCTTGCTTTATACTGCACAAATGCTTTCTGTTTCTACATTGGATCTGTTCTTGTGCAACATGGGAAAGCAACTTTTGCTGAGGTTTTCAAGGTTTTCTTTTGTATAACAATTACAGCAATTGGTGTTTCCCAAACTAGTTCCTTGGCACCAGACACTAACAAGGCCAAAGATTCCACTGCTTCAATATTTGAAATTCTTGATAGCAAACCAATTATTGACTCCAACAACAATGAGGGCACAACACTAGAAACAGTTGTTGGTGATATTGAACTTCAACACATCAGCTTTAATTACCCAACAAGACCTCATATTCAAATTTTCAAAGATTTGAGTCTAAGCATCCCTTCTGGAAAGACTGTTGCCTTGGTTGGAGAAAGTGGTAGTGGAAAATCAACAGTTATCAGCCTCTTGGAGAGATTTTATGACCCTGATTATGGACAAATATTAGTAGATGGAATGGATATCAAAAAATTAAAACTAAGCTGGTTTAGACAGCAAATGGGTTTGGTTGGTCAAGAGCCTATTCTTTTCAATGAAAGCATTAGAGCCAACATAGCTTATGGCAAAGAGGAAGGTGCTACAGAAAATGAGATAATTGCAGCAGCTAAAGCAGCAAATGCACACAGGTTCATAAGTTCTCTTCCAAATGGTTATGACACTTCTGTTGGAGAAAGAGGTACACAATTATCAGGAGGACAAAAGCAACGTATTGCTATTGCGAGAGCCATGTTGAAAGATCCTAAAATCCTTTTGCTTGATGAGGCAACTAGTGCACTTGATGCTGAGTCAGAGCGTGTAGCTCAAGAGGCTTTGGATTCAGTTAGTGTGGATAGAACTACTGTTGTGGTAGCTCATCGTCTTACAACAATTAGAGGGGCTGATATTATAGCAGTGATTAAAAATGGGGTGGTTGCTGAAAAGGGAAGACATGAAGAGTTGATGAAGATTAATGATGGAGCTTATGCTTCTTTGGTAGCTCTACATTCTAGTGCATCATGA 3792 0.3979 MNEVPPPSSTQDEGGNKANQKVPFYKLFTFADQLDVTLMIIGTICAIANGVSQPLMTVILGKVINTFGSTDPSNTVKEVSKVSLLFVYLALGSGMASFLQVSCWMVTGERQAARIRGLYLKAILKQDIAFFDTETTTGEVIGRMSGDTILIQDAMGEKVGKFIQLASVFVGGFVVAFIKGWRLAVVLLACMPCVVLAGAVMSILMAKLSSRGQAAYAEAGNVVDQTVGAIRTVASFTGEKKAIEKYNSKLKVAYNSMVQQGIATGSCLGVLLLIIFCTYGLAMWYGSKMVIKEGYNGGTVINVIIALMTGGMSLGQTSPSLNAFAAGQAAAYKMFGTIKRKPKIDAYDTSGVVLESIKGNIELIDVYFSYPARRDVQIFAGFSLSVPNGTTAALVGQSGSGKSTVISLLERFYDPDAGEVLIDGVNLKSFQLRWIREQIGLVSQEPILFTTSIKENIAYGKEGATDEEITRAITLANAKKFIDKLPQGLNTMAGQNGTQLSGGQKQRIAIARAILKNPRILLLDEATSALDVESERIVQEALENVMSKRTTIIVAHRLTTIRNADTIAVVHQGKIVEKGTHDELIKDVDGAYSQLIRLQEGEKEAESSQKLEADKTSNNFNLDSHLARSSTHRTSFVRSISQSSSRSQHSQTLSFALPHQSGEIENVDIEQSQVDNKKPRKVSIMRLAYLNKPEAPILLFGSIAAILHGLVFPIFGLLFSSAITMFFKPPEQQQKDSKFWALLYMGLGLVTLVVIPLQNYFFGVAGGKLIERIRSMTFEKVVHQEISWFDDPANSSGAVGARLSIDASTVKSLVGDTLALIVQNISTIVAGLVIAFTANWILAFIILAVSPLVLFQGVAQMKFLKGFSADAKMTYEEASQVANDAVSGIRTVATFCAESKVMELYEKKCAGAKTQGVRLGLISGAGFGFSFLALYCTNAFCFYIGSVLVQHGKATFAEVFKVFFCITITAIGVSQTSSLAPDTNKAKDSTASIFEILDSKPIIDSNNNEGTTLETVVGDIELQHISFNYPTRPHIQIFKDLSLSIPSGKTVALVGESGSGKSTVISLLERFYDPDYGQILVDGMDIKKLKLSWFRQQMGLVGQEPILFNESIRANIAYGKEEGATENEIIAAAKAANAHRFISSLPNGYDTSVGERGTQLSGGQKQRIAIARAMLKDPKILLLDEATSALDAESERVAQEALDSVSVDRTTVVVAHRLTTIRGADIIAVIKNGVVAEKGRHEELMKINDGAYASLVALHSSAS* 1264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00701 1263 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 351 599 IPR027417 -
Rops4g00701 1263 CDD ABC_MTABC3_MDL1_MDL2 361 599 - -
Rops4g00701 1263 Gene3D - 351 600 IPR027417 -
Rops4g00701 1263 Pfam ABC transporter transmembrane region 39 311 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops4g00701 1263 Pfam ABC transporter transmembrane region 699 970 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops4g00701 1263 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 699 985 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops4g00701 1263 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1009 1257 IPR027417 -
Rops4g00701 1263 FunFam ABC transporter B family member 1 678 986 - -
Rops4g00701 1263 ProSitePatterns ABC transporters family signature. 500 514 IPR017871 GO:0005524|GO:0016887
Rops4g00701 1263 FunFam ABC transporter B family member 9 26 356 - -
Rops4g00701 1263 CDD ABC_MTABC3_MDL1_MDL2 1020 1256 - -
Rops4g00701 1263 Pfam ABC transporter 1039 1188 IPR003439 GO:0005524
Rops4g00701 1263 Gene3D - 1010 1262 IPR027417 -
Rops4g00701 1263 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 40 326 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops4g00701 1263 CDD ABC_6TM_Pgp_ABCB1_D2_like 688 1003 - -
Rops4g00701 1263 Gene3D ABC transporter type 1, transmembrane domain 663 1008 IPR036640 GO:0005524|GO:0016020
Rops4g00701 1263 PANTHER ABC TRANSPORTER B FAMILY 12 600 IPR039421 -
Rops4g00701 1263 FunFam ABC transporter B family member 1 351 600 - -
Rops4g00701 1263 SMART AAA_5 388 574 IPR003593 GO:0016887
Rops4g00701 1263 SMART AAA_5 1047 1240 IPR003593 GO:0016887
Rops4g00701 1263 SUPERFAMILY ABC transporter transmembrane region 26 342 IPR036640 GO:0005524|GO:0016020
Rops4g00701 1263 SUPERFAMILY ABC transporter transmembrane region 679 1001 IPR036640 GO:0005524|GO:0016020
Rops4g00701 1263 ProSitePatterns ABC transporters family signature. 1160 1174 IPR017871 GO:0005524|GO:0016887
Rops4g00701 1263 FunFam ABC transporter B family member 1 1010 1260 - -
Rops4g00701 1263 Pfam ABC transporter 382 528 IPR003439 GO:0005524
Rops4g00701 1263 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1020 1257 IPR003439 GO:0005524
Rops4g00701 1263 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 361 597 IPR003439 GO:0005524
Rops4g00701 1263 Gene3D ABC transporter type 1, transmembrane domain 26 621 IPR036640 GO:0005524|GO:0016020
Rops4g00701 1263 CDD ABC_6TM_Pgp_ABCB1_D1_like 39 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00701 Rops-Chr4 18359547 18366417 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00701 5 1259 Calmodulin-binding Proteins AT2G36910 45.440 0.0 1065
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00701 K05658 - gmx:100801771 1961.42