Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00700 ATGAGTCGAAGAAACATCACCACCGATGAATTTGCGCTTCTTGCGTTCAAATCCTCCATTACTTTAGACCCCTATCATATGATCAGTAATTGGTCAACCTCCTCTTCTTTTTCTTTGTGCAATTGGGTTGGTGTCACGTGTGATTGGCACCATGGAAGAGTGAAGGCTTTGAATCTGAGTAACATGGGCCTTAGAGGTACCATTTCTCCACAACTGGGGAATCTCTCCTTTCTTGTTGAGCTTAACCTCCATGGCAATGGCTTCTATGGTCAGTTGCCACAAGAGTTATTTGGGTTGCACAGATTGAAGTTGCTTGACTTGAGCAACAACGAGTTTGTTGGAGGAATCCCTGCAAGGGTGGGGGACTTATCAAGGCTTCAGCAATTGAATCTTGGCCATAATAATCTTGCTGGTTTTATCCCACAATCTCTGTTCAACAACTCAATGTTGCAATTCTTTGATCTTAGTTATAATAATCTATCTAGCGACCTTCCATCAAATATTTGCCAAGGACTTCCCAAACTTAAATTACTTTATCTCTTCAGTAATGATCTTTCTGGTAGGATACCGACTGTTTGGCATCAATGCAAAGACTTGGAAAATTTAGAATTATCCAACAATAATTTCAAAAAAGGACGTCTGCCAGCCGACATTGGAAACTTGACCAAGCTTCAATATTTATATCTTGTCGGCAACAACTTGGAAGGTGAAATTCCAGTCTCCCTTTTAAATATCTCTTCTTTGAAGGAGGTCAACCTTCAAGGAAACAATTTAAATGGAAGTGTCCCGCATGAGATGTGTCATCAGCTTCCTCAACTTGAAGCCTTTAGTTTATATGCTAATCAAATTGAAGGAAGCATCCCAAGATCAATTGGTAACTGCACATCACTTAAAGAGTTATACTTAGGGAACAACTATCTGGCAGGTTCAACACCCACAGAGATTGGTGATCTTCGTCAACTTGAGATTGTATCATTGGGGTTTAACAACTTGAGTGGACCTATTCCTTCAAAACTCCTCAACATTTCAACATTGACATACTTGCATATTGGACACAATTCTCTCTCTGGCATTCTTTCAGCAAACATGGGATATAACCTTCCTAACCTAGAAGAACTATACTTATCTCATAATCAGCTTGTTGGAAACATTCCAAATGGTATATCCAATGCTTCTAAACTCATTATACTGAGCTTGAGTGGCAATGAATTCAACGGAATCATACCCAACGTATTTGGGGATTTAATGGTCCTCGAAATTCTCGATATAGGAGAGAATCATTTGACACTTGAATTCAACTTCTTTACTTCCCTGACGAGCTGCAGACATTTGACACATCTGGGTGTATCAAAGAATAGGTTACTATCAAAACTTCCCAAATCAATTGGAAACTTATCCAAGTCTCTAGAATATTTCTACGCAGATTCTTGTAGAATTTATGGCAATATTCCACTAGAAATAGGAAACATAAGCAACTTGATGGGTTTATCTTTGAGTGAGAATGATATAAATGGACCAATGCCTAGTACATTTAAAAGGTTGCAGAAACTTCAGTATTTGGGTCTTGATTACAATGGATTGCAGGGATCCATAATCGATGAGCTTTGTGAAATTAGTAGTTTGAGTGAGTTGTATCTAACCAACAATAAACTTTCTGGAGCATTACCAACATGCTTGGGAAATATGACTTTTCTTAGAAAGGTACACATAGGATCTAATAGAGTGATCTCTGGGATACCTTCTTCTTTTTGGAGTCTCAAAGATATCTTAGAGGTAAACTTATCCTCCAATGCTTTGATTGGAAATCTTCCACCAGAGATTGGGCAGATGAGAGCTCTTGTACTACTAGATTTGTCAAGAAATCAGATATCAAGCAACATTCCAACAACCATCATTTTCTTGTTAACTTTGCAGACTCTCTCCTTAGCGCATAACAAATTGCAAGGGTCTATCCCTGCATCACTTGGAAAAATGGTAAGCTTGAGCTTCTTGGACTTATCCCACAATCTTTTGTCTGGTGGGATTCCAAAATCCTTGGAATCACTTGCCTATCTTAAATACATAAACTTTTCATACAATAAATTACAAGGGGAGATTCCAGATGGTGGACCTTTCAAAAATTTCACAGCTCAATCTTTCATGTGTAATGAAGCACTTTGTGGCAATCCTCACCTACAAGTACCTCCATGTAGTAAACAAGTTAGGCGAAGGTCAGTGACAAAGAAGCTATTAATCAAATGCATACCACCCTTAATCGTGTCAATCATTTTGATTGCTGCATGCGTAATACTCCTACAGCTTAAAAGGAAAAGGGTTGAGAATCCACATGAAAGGGATTTATCAACTTTAAGAGTTCCAAGAAGAATATCCTATTATGAAATTGTAAAAGCAACTAATGGATTCAGTGAGAGTAATTTACTTGGAAAGGGGAGCTTTGGTTCTGTGTATCGAGGGATGCTCTCCAACGGAATAATGGTTGCTATTAAAGTAATTGATTTGGACTCAGAAGCATCATCAAGGAGCTTTGATGTAGAATGCAATGCAATGCGTAATCTACGACATCGAAATCTTGTTAAGATTATTAGTAGTTGTTCAAATGTTGATTTAAAATCTTTGGTGATGGAGTTTATGTCAAATGGAAGTGTGGACCAATGGTTATACTCAAATAACTATTGTTTAGATTTCTTGCAAAGGTTGAATATAATGATAGATGTGGCATTTGCATTGGAATATCTCCATCACGGTTCTTTAATACCAGTGGTTCATTGTGATCTGAAGCCTAGTAATGTTTTACTGGATGAAAACATGGTTGCACATGTCAGCGATTTTGGCATTGCGAAGCTCTTAGATGAAGGACAATCTAAAACTCATACCGAGACCTTGGCTACTCTTGGCTACGTTGCACCAGAGTATGGATCAAAGGGAATTATTTCTGTCAAAGGAGATGTGTACAGTTATGGGATTATGTTAATGGAAATGTTCACAAGAAAGAAGCCAACGGATGATATGTTTGTGGCAGGAATGAGCTTGAAATATTGGATTAGTGACTCAATGCCCAATTCAATCATGGAAGTTGTGGATTCTAATTTAATACAACAATATGGGGAACAAATTAATGACATATTGGCTCACATATTATCTATTTTGGAACTAGCCTTGAGTTGTTGTGTAGATTCACCCGAGGCACGAATTACAATTACAGATGTCATTATGTCATTAACCAAAATCAAGACCCAGTTTACATCCAATCTCTGA 3255 0.3785 MSRRNITTDEFALLAFKSSITLDPYHMISNWSTSSSFSLCNWVGVTCDWHHGRVKALNLSNMGLRGTISPQLGNLSFLVELNLHGNGFYGQLPQELFGLHRLKLLDLSNNEFVGGIPARVGDLSRLQQLNLGHNNLAGFIPQSLFNNSMLQFFDLSYNNLSSDLPSNICQGLPKLKLLYLFSNDLSGRIPTVWHQCKDLENLELSNNNFKKGRLPADIGNLTKLQYLYLVGNNLEGEIPVSLLNISSLKEVNLQGNNLNGSVPHEMCHQLPQLEAFSLYANQIEGSIPRSIGNCTSLKELYLGNNYLAGSTPTEIGDLRQLEIVSLGFNNLSGPIPSKLLNISTLTYLHIGHNSLSGILSANMGYNLPNLEELYLSHNQLVGNIPNGISNASKLIILSLSGNEFNGIIPNVFGDLMVLEILDIGENHLTLEFNFFTSLTSCRHLTHLGVSKNRLLSKLPKSIGNLSKSLEYFYADSCRIYGNIPLEIGNISNLMGLSLSENDINGPMPSTFKRLQKLQYLGLDYNGLQGSIIDELCEISSLSELYLTNNKLSGALPTCLGNMTFLRKVHIGSNRVISGIPSSFWSLKDILEVNLSSNALIGNLPPEIGQMRALVLLDLSRNQISSNIPTTIIFLLTLQTLSLAHNKLQGSIPASLGKMVSLSFLDLSHNLLSGGIPKSLESLAYLKYINFSYNKLQGEIPDGGPFKNFTAQSFMCNEALCGNPHLQVPPCSKQVRRRSVTKKLLIKCIPPLIVSIILIAACVILLQLKRKRVENPHERDLSTLRVPRRISYYEIVKATNGFSESNLLGKGSFGSVYRGMLSNGIMVAIKVIDLDSEASSRSFDVECNAMRNLRHRNLVKIISSCSNVDLKSLVMEFMSNGSVDQWLYSNNYCLDFLQRLNIMIDVAFALEYLHHGSLIPVVHCDLKPSNVLLDENMVAHVSDFGIAKLLDEGQSKTHTETLATLGYVAPEYGSKGIISVKGDVYSYGIMLMEMFTRKKPTDDMFVAGMSLKYWISDSMPNSIMEVVDSNLIQQYGEQINDILAHILSILELALSCCVDSPEARITITDVIMSLTKIKTQFTSNL* 1085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00700 1084 FunFam Serine-threonine protein kinase plant-type 781 876 - -
Rops4g00700 1084 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 877 1084 - -
Rops4g00700 1084 Gene3D Phosphorylase Kinase; domain 1 783 876 - -
Rops4g00700 1084 SMART serkin_6 801 1080 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g00700 1084 ProSiteProfiles Leucine-rich repeat profile. 369 391 IPR001611 GO:0005515
Rops4g00700 1084 Gene3D Transferase(Phosphotransferase) domain 1 877 1083 - -
Rops4g00700 1084 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 6 170 - -
Rops4g00700 1084 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 436 1074 - -
Rops4g00700 1084 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 437 734 - -
Rops4g00700 1084 ProSitePatterns Serine/Threonine protein kinases active-site signature. 920 932 IPR008271 GO:0004672|GO:0006468
Rops4g00700 1084 Gene3D Ribonuclease Inhibitor 6 168 IPR032675 -
Rops4g00700 1084 Pfam Leucine rich repeat 612 671 IPR001611 GO:0005515
Rops4g00700 1084 Pfam Leucine rich repeat 247 307 IPR001611 GO:0005515
Rops4g00700 1084 Pfam Leucine rich repeat 319 380 IPR001611 GO:0005515
Rops4g00700 1084 Pfam Leucine rich repeat 124 185 IPR001611 GO:0005515
Rops4g00700 1084 Gene3D Ribonuclease Inhibitor 211 430 IPR032675 -
Rops4g00700 1084 Gene3D Ribonuclease Inhibitor 431 738 IPR032675 -
Rops4g00700 1084 ProSiteProfiles Protein kinase domain profile. 801 1081 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g00700 1084 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 270 434 - -
Rops4g00700 1084 Gene3D Ribonuclease Inhibitor 169 210 IPR032675 -
Rops4g00700 1084 Pfam Protein kinase domain 802 1070 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g00700 1084 SUPERFAMILY RNI-like 365 700 - -
Rops4g00700 1084 SUPERFAMILY Protein kinase-like (PK-like) 776 1078 IPR011009 -
Rops4g00700 1084 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 190 269 - -
Rops4g00700 1084 ProSitePatterns Protein kinases ATP-binding region signature. 807 829 IPR017441 GO:0005524
Rops4g00700 1084 Pfam Leucine rich repeat N-terminal domain 8 48 IPR013210 -
Rops4g00700 1084 SMART LRR_sd22_2 367 386 - -
Rops4g00700 1084 SMART LRR_sd22_2 658 684 - -
Rops4g00700 1084 SMART LRR_sd22_2 221 247 - -
Rops4g00700 1084 SMART LRR_sd22_2 441 467 - -
Rops4g00700 1084 SMART LRR_sd22_2 634 655 - -
Rops4g00700 1084 SMART LRR_sd22_2 610 629 - -
Rops4g00700 1084 SMART LRR_sd22_2 318 344 - -
Rops4g00700 1084 SMART LRR_typ_2 148 171 IPR003591 -
Rops4g00700 1084 SMART LRR_typ_2 221 245 IPR003591 -
Rops4g00700 1084 SMART LRR_typ_2 270 294 IPR003591 -
Rops4g00700 1084 SMART LRR_typ_2 318 342 IPR003591 -
Rops4g00700 1084 SMART LRR_typ_2 538 561 IPR003591 -
Rops4g00700 1084 SMART LRR_typ_2 392 414 IPR003591 -
Rops4g00700 1084 SMART LRR_typ_2 610 634 IPR003591 -
Rops4g00700 1084 SMART LRR_typ_2 658 682 IPR003591 -
Rops4g00700 1084 SMART LRR_typ_2 75 99 IPR003591 -
Rops4g00700 1084 SMART LRR_typ_2 367 391 IPR003591 -
Rops4g00700 1084 SMART LRR_typ_2 123 147 IPR003591 -
Rops4g00700 1084 SUPERFAMILY RNI-like 57 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00700 Rops-Chr4 18269849 18279880 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00700 461 708 Receptor kinase-like Gene Family AT3G47570 30.000 6.79e-23 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Rops4g00700 Pkinase 1.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00700 - K13420 mtr:25481440 1227.62