Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00691 ATGGGAAAATGTACCAATATGGAAAGTGATGCTGAGGCATCTTCCTCCTCCACTTCCCCCACCAACACTTTTAGTAGATCCTACTTTTCCTCTTCCTCCTCAACAACAACAATAACAACATCACCAACATCTTCTACTTCAAATTCAGATTCATACACCAAGCAAGACTCCAACAAAACTCCTCTAAATGATTCAACCAACATGAAAAATGAGAAGGACTCAAAGGGGTGCAAGAAGAGGCAAAGAAGTGAAAGTGATAGCAATCACCCTACTTATAGAGGAGTAAGAATGAGAACATGGGGCAAATGGGTATCTGAGATTCGTGAGCCAAGAAAAAAATCAAGAATATGGCTTGGAACATACCCTACTGCAGAAATGGCAGCTAGAGCACATGATGTAGCTGCTTTAGCTATCAAAGGCCATTCTGCTTACCTTAATTTCCCTGAATTGGCACAAGAACTTCCAAGGCCAACAAGCACATCACCAAAGGACATTCAAGCTGCAGCTGCAAAAGCAGCAAACACTGCCTTTGATGTGATTAAGTATTGTGAAGAAACTGAAGGTGAACCAAGAGAAGCAGATCAAGCTTCATCTTCAACTCTTTCCATAGATAATACTTCTTCAAGTTCTCCCTCTGAGAATGATGATGCTACATTGTTTGACTTACCAGATCTTTTCCCTGATGGAAACCATGGACTTTGTTCCTATTCTTCTTCTTGGCATTTATGTGCAGTTGATAGTGGATTCAGGCTTGAGGAATCACTTTTTTGGGAGAATTAA 780 0.4064 MGKCTNMESDAEASSSSTSPTNTFSRSYFSSSSSTTTITTSPTSSTSNSDSYTKQDSNKTPLNDSTNMKNEKDSKGCKKRQRSESDSNHPTYRGVRMRTWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGHSAYLNFPELAQELPRPTSTSPKDIQAAAAKAANTAFDVIKYCEETEGEPREADQASSSTLSIDNTSSSSPSENDDATLFDLPDLFPDGNHGLCSYSSSWHLCAVDSGFRLEESLFWEN* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00691 259 Gene3D AP2/ERF domain 91 149 IPR036955 GO:0003700|GO:0006355
Rops4g00691 259 ProSiteProfiles AP2/ERF domain profile. 91 148 IPR001471 GO:0003700|GO:0006355
Rops4g00691 259 FunFam Ethylene-responsive transcription factor 2 91 149 - -
Rops4g00691 259 MobiDBLite consensus disorder prediction 193 216 - -
Rops4g00691 259 MobiDBLite consensus disorder prediction 1 93 - -
Rops4g00691 259 Pfam AP2 domain 90 141 IPR001471 GO:0003700|GO:0006355
Rops4g00691 259 PRINTS Ethylene responsive element binding protein signature 114 130 IPR001471 GO:0003700|GO:0006355
Rops4g00691 259 PRINTS Ethylene responsive element binding protein signature 92 103 IPR001471 GO:0003700|GO:0006355
Rops4g00691 259 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 69 227 - -
Rops4g00691 259 MobiDBLite consensus disorder prediction 186 221 - -
Rops4g00691 259 MobiDBLite consensus disorder prediction 1 65 - -
Rops4g00691 259 CDD AP2 92 150 IPR001471 GO:0003700|GO:0006355
Rops4g00691 259 SMART rav1_2 91 154 IPR001471 GO:0003700|GO:0006355
Rops4g00691 259 MobiDBLite consensus disorder prediction 66 91 - -
Rops4g00691 259 SUPERFAMILY DNA-binding domain 91 149 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00691 Rops-Chr4 18121509 18122472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00691 79 256 AP2-EREBP Transcription Factor Family AT2G44940 54.854 4.88e-70 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops4g00691 AP2 3.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00691 - - gmx:100801129 318.546