Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00686 ATGTTGGACTATGAATGGGCTAACCCATCAACCATAATGCTCACCGGAAATGAAGACGCCGCCGCAGCCGCCGCTTCCGATCAAGCCCACCGCCAAATCTTCGACCACTACACTTCCCACAACACCCTCTTACCTGACTATTTCTTACATGGGCCTGGGCCTACACCCGCCACCACCACCACAAACACCGTTGATTTCTCTCAACACCACCACTTCAACCCACAAGCTCACCATCATATCCAGTTCTTCGACCCACGCGCCTTCCACGGCGCGTCCTCAACTTCATACCCTCCACCCCAACCACCACCACCACCACCTCCACCTCCCATGCTGTCCCTCGACCCACTCCCCCACGTAAACCCGGCCACCTGTGGGCCCGGGCCTGGACCAGGACTTCTTATTATTCCTAAGTCTGAGGACGTCGGTCGGCCCATGGACTTCGTGGGCTCGAGAATTGGGCTCAACCTTGGTGGCCGAACTTATTTTTCATCTTCTGAAGATGATTTTGTGAGCCGGCTCTATCGCCGGTCCAGACCCTCTGAACCGGGCTCGACGGGTTCTTCCAACTCTCCGAGGTGCCAGGCCGAGGGATGCAATGCTGATCTGTCACAGGCTAAGCACTACCACCGCCGCCACAAGGTGTGTGAGTTTCACTCCAAGGCAGCCACCGTCATCGCCGCCGGGTTGACTCAGCGATTCTGCCAACAATGCAGCAGGTTTCATCTTCTTTCTGAGTTTGATAATGGGAAACGTAGCTGCAGGAAGAGATTGGCAGATCATAATCGTCGTAGAAGAAAAACTCAACAGCCAACTCAAGAGCTTCAGAAATCTCAAACCACTTTGGATAATGTTGCAAGATCCCCACCTGATTCCGGAACTCAGTCATCATCGTCGGTGACGGTGGCGGTGTCGCCGCCGGATTATTTCCGGCAAAGGCCATACCAAAGCACAAGCCCTTCAACAACTTCAAGCTCACTGTTTTTCTCAAGTGGCTAG 996 0.5422 MLDYEWANPSTIMLTGNEDAAAAAASDQAHRQIFDHYTSHNTLLPDYFLHGPGPTPATTTTNTVDFSQHHHFNPQAHHHIQFFDPRAFHGASSTSYPPPQPPPPPPPPPMLSLDPLPHVNPATCGPGPGPGLLIIPKSEDVGRPMDFVGSRIGLNLGGRTYFSSSEDDFVSRLYRRSRPSEPGSTGSSNSPRCQAEGCNADLSQAKHYHRRHKVCEFHSKAATVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKTQQPTQELQKSQTTLDNVARSPPDSGTQSSSSVTVAVSPPDYFRQRPYQSTSPSTTSSSLFFSSG* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00686 331 MobiDBLite consensus disorder prediction 95 115 - -
Rops4g00686 331 SUPERFAMILY SBT domain 191 271 IPR036893 GO:0003677|GO:0005634
Rops4g00686 331 MobiDBLite consensus disorder prediction 271 331 - -
Rops4g00686 331 Pfam SBP domain 193 266 IPR004333 GO:0003677
Rops4g00686 331 Gene3D - 183 254 IPR036893 GO:0003677|GO:0005634
Rops4g00686 331 FunFam Squamosa promoter-binding-like protein 14 184 254 - -
Rops4g00686 331 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 175 322 IPR044817 GO:0003677
Rops4g00686 331 MobiDBLite consensus disorder prediction 260 331 - -
Rops4g00686 331 ProSiteProfiles Zinc finger SBP-type profile. 190 267 IPR004333 GO:0003677
Rops4g00686 331 MobiDBLite consensus disorder prediction 88 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00686 Rops-Chr4 18036623 18039125 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00686 1 240 SBP-box Gene Family AT1G02065 45.635 5.21e-59 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Rops4g00686 SBP 4.8e-31 No_clan