Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Rops4g00685 | ATGTTGGACTATGAATGGGCTAACCCATCAACCATAATGCTCACCGGAAATGAAGACGCCGCCGCAGCCGCCGCTTCCGATCAAGCCCACCGCCAAATCTTCGACCACTACACTTCCCACAACACCCTCTTACCTGACTATTTCTTACATGGGCCTGGGCCTACACCCGCCACCACCACCACAAACACCGTTGATTTCTCTCAACACCACCACTTCAACCCACAAGCTCACCATCATATCCAGTTCTTCGACCCACGCGCCTTCCACGGCGCGTCCTCAACTTCATACCCTCCACCCCAACCACCACCACCACCACCTCCACCTCCCATGCTGTCCCTCGACCCACTCCCCCACGTAAACCCGGCCACCTGTGGGCCCGGGCCTGGACCAGGACTTCTTATTATTCCTAAGTCTGAGGACGTCGGTCGGCCCATGGACTTCGTGGGCTCGAGAATTGGGCTCAACCTTGGTGGCCGAACTTATTTTTCATCTTCTGAAGATGATTTTGTGAGCCGGCTCTATCGCCGGTCCAGACCCTCTGAACCGGGCTCGACCGGTTCTTCCAACTCTCCGAGGTGCCAGGCCGAGGGATGCAATGCTGATCTGTCACAGGCTAAGCACTACCACCGCCGCCACAAGGTGTGTGAGTTTCACTCCAAGGCAGCCACCGTCATCGCCGCCGGGTTGACTCAGCGATTCTGCCAACAATGCAGCAGGTTTCATCTTCTTTCTGAGTTTGATAATGGGAAACGTAGCTGCAGGAAGAGATTGGCAGATCATAATCGTCGTAGAAGAAAAACTCAACAGCCAACTCAAGAGCTTCAGAAATCTCAAACCACTTTGGATAATGTTGCAAGATCCCCACCTGATTCCGGAACTCAGTCATCATCGTCGGTGACGGTGGCGGTGTCGCCGCCGGATTATTTCCGGCAAAGGCCATACCAAAGCACAAGCCCTTCAACAACTTCAAGCTCACTGTTTTTCTCAAGTGGCTAG | 996 | 0.5422 | MLDYEWANPSTIMLTGNEDAAAAAASDQAHRQIFDHYTSHNTLLPDYFLHGPGPTPATTTTNTVDFSQHHHFNPQAHHHIQFFDPRAFHGASSTSYPPPQPPPPPPPPPMLSLDPLPHVNPATCGPGPGPGLLIIPKSEDVGRPMDFVGSRIGLNLGGRTYFSSSEDDFVSRLYRRSRPSEPGSTGSSNSPRCQAEGCNADLSQAKHYHRRHKVCEFHSKAATVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKTQQPTQELQKSQTTLDNVARSPPDSGTQSSSSVTVAVSPPDYFRQRPYQSTSPSTTSSSLFFSSG* | 332 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Rops4g00685 | 331 | MobiDBLite | consensus disorder prediction | 95 | 115 | - | - | |
Rops4g00685 | 331 | SUPERFAMILY | SBT domain | 191 | 271 | IPR036893 | GO:0003677|GO:0005634 | |
Rops4g00685 | 331 | MobiDBLite | consensus disorder prediction | 271 | 331 | - | - | |
Rops4g00685 | 331 | Pfam | SBP domain | 193 | 266 | IPR004333 | GO:0003677 | |
Rops4g00685 | 331 | Gene3D | - | 183 | 254 | IPR036893 | GO:0003677|GO:0005634 | |
Rops4g00685 | 331 | FunFam | Squamosa promoter-binding-like protein 14 | 184 | 254 | - | - | |
Rops4g00685 | 331 | PANTHER | SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 | 175 | 322 | IPR044817 | GO:0003677 | |
Rops4g00685 | 331 | MobiDBLite | consensus disorder prediction | 260 | 331 | - | - | |
Rops4g00685 | 331 | ProSiteProfiles | Zinc finger SBP-type profile. | 190 | 267 | IPR004333 | GO:0003677 | |
Rops4g00685 | 331 | MobiDBLite | consensus disorder prediction | 88 | 124 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Rops4g00685 | Rops-Chr4 | 17998477 | 18001074 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Rops4g00685 | 1 | 240 | SBP-box Gene Family | AT1G02065 | 45.635 | 5.21e-59 | 188 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | SBP | Rops4g00685 | SBP | 4.8e-31 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Rops4g00685 | - | - | gmx:100802206 | 482.256 |