Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00679 ATGTTTGGACGTGGACCAAGGAAGAGTGATAACACCAAATATTATGATATCCTTGGTGTTACAAAGAATGCTAGTGAAGATGAAATCAAGAAAGCCTATAGAAAGGCAGCGATGAAGAACCATCCAGATAAGGGTGGAGATCCTGAGAAGTTCAAGGAGTTGGGTCAAGCATATGAAGTTTTAAGTGATCCTGAAAAGAAAGAACTGTATGACCAATATGGTGAAGATGCCCTTAAAGAAGGCATGGGAGGAGGAGGAGGCTCATTTCATAATCCATTTGATATATTTGAATCATTTTTTGGTGGAGCAGGCTTCAGTGGTGGTGGTAGTTCACGAGGTAGAAGACAGAAGCATGGAGAAGATGTGGTGCATTCTTTAAAGGTTTCCTTGGAGGACGTGTATAATGGCACAACAAAGAAACTATCTCTTTCTAGAAATGTATTATGCTCAAAATGTAAAGGGAAAGGTTCAAAGAGTGGAACAGCTGGTAGGTGTTTTGGATGCCAAGGCACAGGTATGAAGATTACAAGAAGGCAGATTGGACTGGGCATGATTCAACAAATGCAACACGTCTGTCCTGAATGCAGGGGAACTGGTGAGGTGATTAGTGAGAGAGATAGATGCCCTCAGTGCAAGGGAAGCAAGATTACTCAGGAAAAGAAGGTGCTGGAGGTGCATGTTGAGAAGGGGATGCAGCAAGGTCAGAAGATTGTATTTGAAGGACAAGCTGATGAAGCTCCTGACACAATCACAGGAGACATTGTTTTTGTCTTACAAGTAAAGGAGCACCCGAGGTTCAGGAGGGAGCATGATGACCTCCATATTGATCACAATCTGAGCTTAACAGAGGCTCTCTGTGGCTTCCAGTTTGCGGTCACGCATCTTGATGGGAGGCAACTATTGATCAAATCAAACCCTGGAGAAGTCATCAAGCCAGGTCAATTTAAAGCAATAAACGATGAGGGAATGCCACAACACACTAGGCCCTTCATGAAGGGGTGCCTTTACATCAAGTTCAATGTTGATTTCCCAGACTCAGGTTTTATTTCCCCTGATCAATGCCGGATTGTAGAAAAGGTATTACCTCAAAAGTCCAGCAAGCACCTGTCAGATATGGAGCTGGAGGATTGTGAGGAGACCATTCTGCACGATGTCAACATGAAGGAGGAGATGAATCGAAAGCAGCAACATCATTACCATGAAGCATATGATGAAGATGATGATGAGCCGTCGATGCCACGAGTGCAATGTGCTCAACAGTAG 1263 0.4378 MFGRGPRKSDNTKYYDILGVTKNASEDEIKKAYRKAAMKNHPDKGGDPEKFKELGQAYEVLSDPEKKELYDQYGEDALKEGMGGGGGSFHNPFDIFESFFGGAGFSGGGSSRGRRQKHGEDVVHSLKVSLEDVYNGTTKKLSLSRNVLCSKCKGKGSKSGTAGRCFGCQGTGMKITRRQIGLGMIQQMQHVCPECRGTGEVISERDRCPQCKGSKITQEKKVLEVHVEKGMQQGQKIVFEGQADEAPDTITGDIVFVLQVKEHPRFRREHDDLHIDHNLSLTEALCGFQFAVTHLDGRQLLIKSNPGEVIKPGQFKAINDEGMPQHTRPFMKGCLYIKFNVDFPDSGFISPDQCRIVEKVLPQKSSKHLSDMELEDCEETILHDVNMKEEMNRKQQHHYHEAYDEDDDEPSMPRVQCAQQ* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00679 420 Gene3D - 264 345 - -
Rops4g00679 420 CDD DnaJ 14 63 IPR001623 -
Rops4g00679 420 CDD DnaJ_zf 149 215 IPR001305 GO:0031072|GO:0051082
Rops4g00679 420 MobiDBLite consensus disorder prediction 391 412 - -
Rops4g00679 420 FunFam DnaJ subfamily A member 2 149 215 - -
Rops4g00679 420 Pfam DnaJ C terminal domain 123 344 IPR002939 -
Rops4g00679 420 SUPERFAMILY HSP40/DnaJ peptide-binding domain 120 264 IPR008971 GO:0006457|GO:0051082
Rops4g00679 420 FunFam DnaJ subfamily A member 2 263 345 - -
Rops4g00679 420 Gene3D DnaJ domain 10 110 IPR036869 -
Rops4g00679 420 Hamap Chaperone protein DnaJ [dnaJ]. 10 390 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Rops4g00679 420 ProSiteProfiles dnaJ domain profile. 13 74 IPR001623 -
Rops4g00679 420 ProSitePatterns Nt-dnaJ domain signature. 51 70 IPR018253 -
Rops4g00679 420 SUPERFAMILY Chaperone J-domain 9 109 IPR036869 -
Rops4g00679 420 Gene3D - 149 215 - -
Rops4g00679 420 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 146 218 IPR036410 -
Rops4g00679 420 FunFam dnaJ protein homolog 10 110 - -
Rops4g00679 420 CDD DnaJ_C 120 346 - -
Rops4g00679 420 Gene3D - 111 263 - -
Rops4g00679 420 ProSiteProfiles Zinc finger CR-type profile. 136 220 IPR001305 GO:0031072|GO:0051082
Rops4g00679 420 SMART dnaj_3 12 66 IPR001623 -
Rops4g00679 420 Pfam DnaJ domain 13 71 IPR001623 -
Rops4g00679 420 PRINTS DnaJ domain signature 15 33 IPR001623 -
Rops4g00679 420 PRINTS DnaJ domain signature 46 66 IPR001623 -
Rops4g00679 420 PRINTS DnaJ domain signature 66 85 IPR001623 -
Rops4g00679 420 PANTHER DNAJ-LIKE-2, ISOFORM A-RELATED 11 401 IPR044713 GO:0006457|GO:0030544
Rops4g00679 420 SUPERFAMILY HSP40/DnaJ peptide-binding domain 265 345 IPR008971 GO:0006457|GO:0051082
Rops4g00679 420 MobiDBLite consensus disorder prediction 391 420 - -
Rops4g00679 420 Pfam DnaJ central domain 149 215 IPR001305 GO:0031072|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00679 Rops-Chr4 17894962 17898912 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00679 14 73 C2H2 Transcription Factor Family AT1G74250 43.478 2.54e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00679 K09503 - gmx:100800590 750.74