Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00678 ATGACTTATGAAGAGGCAAGTGAGGTGGCAAATGATGTTGTTAGTGGCATAAGAACTGTTGCAACATTTTGTGTTGAGTCAAAGGTGATGGAATTGTATGCGAAGAAATGTGCAAAGGCAAAGACACAAGGTGTTCGGTTGAGGCTTATTACTGGTGCTGGATTTGGTTTCTCTTTTCTTGCTCTATACTGCACAAATTCTTTCTGTTTCTACATTGGATCTGATCTTGTGCAACATGGGAAAGCAACTTTTGCTGAGGTTATCAAGATGAAGTGGATATCAAAGTTCAAACTAAGCTGGTTTAGAAGGCAAATGGGTTTGGTTGGTCAAGAGCCTATTCTTTTCAATGAAAGCATTAAAGCCAACATAACTTATGGCAAAGAAGGTAATGCTAGAGAAGATGAGATAATTGTAGCAGCTCAAGCAGCAAATGCACACAAGTTCATAAGTTCTCTTCCAAATGTCTATGACACTTTTGTTGGAGAAAGAGTTCGAGAGGCTTTGGATTTAGTTAGTGTTGATAGAACTACTGTTGTGGTAGCTCATCGTCTTACAACAATTAGAGGGGTTGATATTATAGTAGTGATTAAAAATGGGGTGGTTGCTGAAAAGGGAAGATATGAAGAGTTGATGAAGATTAATGATGGAGCTTATGCTTTATTTGTAGCTCTACATTCTAGTGCATCATAA 690 0.3797 MTYEEASEVANDVVSGIRTVATFCVESKVMELYAKKCAKAKTQGVRLRLITGAGFGFSFLALYCTNSFCFYIGSDLVQHGKATFAEVIKMKWISKFKLSWFRRQMGLVGQEPILFNESIKANITYGKEGNAREDEIIVAAQAANAHKFISSLPNVYDTFVGERVREALDLVSVDRTTVVVAHRLTTIRGVDIIVVIKNGVVAEKGRYEELMKINDGAYALFVALHSSAS* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00678 229 Pfam ABC transporter transmembrane region 3 88 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops4g00678 229 PANTHER ABC TRANSPORTER B FAMILY 93 163 IPR039421 -
Rops4g00678 229 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 91 219 IPR027417 -
Rops4g00678 229 Gene3D - 163 226 IPR027417 -
Rops4g00678 229 Gene3D ABC transporter type 1, transmembrane domain 1 92 IPR036640 GO:0005524|GO:0016020
Rops4g00678 229 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 88 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops4g00678 229 Gene3D - 93 162 IPR027417 -
Rops4g00678 229 SUPERFAMILY ABC transporter transmembrane region 3 88 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00678 Rops-Chr4 17881410 17883023 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00678 3 90 Calmodulin-binding Proteins AT2G36910 26.136 4.28e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00678 K05658 - fve:101292750 178.718