Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00664 ATGAGTCGAAGAAACATCACCACCGATGAATTTGCGCTTCTTGCGTTCAAATCCTCCATTACTTTAGACCCCTATCATATGATCAGTAATTGGTCAACCTCCTCTTCTTTTTCTTTGTGCAATTGGGTTGGTGTCACGTGTGATTGGCACCATGGAAGAGTGAAGGCTTTGAATCTGAGTAACATGGGCCTTAGAGGTACCATTTCTCCACAACTGGGGAATCTCTCCTTTCTTGTTGAGCTTAACCTCCATGGCAATGGCTTCTATGGTCAGTTGCCACAAGAGTTATTTGGGTTGCACAGATTGAAGTTGCTTGACTTGAGCAACAACGAGTTTGTTGGAGGAATCCCTGCAAGGGTGGGGGACTTATCAAGGCTTCAGCAATTGAATCTTGGCCATAATAATCTTGCTGGTTTTATCCCACAATCTCTGTTCAACAACTCAATGTTGCAATTCTTTGATCTTAGTTATAATAATCTATCTAGCGACCTTCCATCAAATATTTGCCAAGGACTTCCCAAACTTAAATTACTTTATCTCTTCAGTAATGATCTTTCTGGTAGGATACCGACTGTTTGGCATCAATGCAAAGACTTGGAAAATTTAGAATTATCCAACAATAATTTCAAAAAAGGACGTCTGCCAGCCGACATTGGAAACTTGACCAAGCTTCAATATTTATATCTTGTCGGCAACAACTTGGAAGGTGAAATTCCAGTCTCCCTTTTAAATATCTCTTCTTTGAAGGAGGTCAACCTTCAAGGAAACAATTTAAATGGAAGTGTCCCGCATGAGATGTGTCATCAGCTTCCTCAACTTGAAGCCTTTAGTTTATATGCTAATCAAATTGAAGGAAGCATTCCAAGATCAATTGGTAACTGCACATCACTTAAAGAGTTATACTTAGGGAACAACTATCTGGCAGGTTCAACACCCACAGAGATTGGTGATCTTCGTCAACTTGAGATTGTATCATTGGGATTTAACAACTTGAGTGGACCTATTCCTTCAAAACTCCTCAACATTTCAACATTGACATACTTGCATATTGGACACAATTCTCTCTCTGGCATTCTTTCAGCAAACATGGGATATAACCTTCCTAACCTAGAAGAACTATACTTATCTCATAATCAGCTTGTTGGAAACATTCCAAATGGTATATCCAATGCTTCTAAACTCATTATACTGAGCTTGAGTGGCAATGAATTCAACGGAATCATACCCAACGTATTTGGGGATTTAATGGTCCTCGAAATTCTCGATATAGGGGAGAATAATTTGACACCTGAATTCAACTTCTTTACTTCCCTGACGAGCTGCAGACATTTGACACATCTGGGTGTATCAAAGAATAGGTTACTATCAAAACTTCCCAAATCAATTGGAAACTTATCCAAGTCTCTAGAATATTTCTACGCAGATTCTTGTAGAATTTATGGCAATATTCCACTAGAAATAGGAAACATAAGCAACTTGATGGGTTTATCTTTGAGTGAGAATGATATAAATGGACCAATGCCTAGTACATTTAAAAGGTTGCAGAAACTTCAGTATTTGGGTCTTGATTACAATGGATTGCAGGGATCCATAATCGACGAGCTTTGTGAAATTAGTAGTTTGAGTGAGTTGTATCTAACCAACAATAAACTTTCTGGAGCATTACCAACATGCTTGGGAAATATGACTTTTCTTAGAAAGACTCTCTCCTTAGCGCATAACAAATTGCAAGGGTCTATCCCTGCATCACTTGGAAAAATGGTAAGCTTGAGCTTCTTGGACTTATCCCACAATCTTTTGTCTGGTGGGATTCCAAAATCCTTGGAATCACTTGCCTATCTTAAATACATCAACTTTTCATACAATAAATTACAAGGGGAGATTCCAGATGGTGGACCTTTCAAAAATTTCACAGCTCAATCTTTCATGTGTAATGAAGCACTTTGTGGCAATCCTCACCTACAAGTACCTCCATGTAGTAAACAAGTTAGGCGAAGGTCAGTGACAAAGAAGCTATTAATCAAATGCATACCACCCTTAATCGTGTCAATCATTTTGATTGCTGCATGCGTAATACTCCTACAGCTTAAAAGGAAAAGGGTTGAGAATCCACTTGAAAGGGATTTATCAACTTTAAGAGTTCCAAGAAGAATATCCTATTATGAAATTGTAAAAGCAACTAATGGATTCAGTGAGAGTAATTTACTTGGAAAGGGGAGCTTTGGTTCTGTGTATCGAGGGATGCTCTCCAACGGAATAACGGTTGCTATTAAAGTAATTGATTTGGACTCAGAAGCATCATCAAGGAGCTTTGATGTAGAATGCAATGCAATGCGTAATCTACGACATCGAAATCTTGTTAAGATTATTAGTAGTTGTTCAAATGTTGATTTAAAATCTTTGGTGATGGAGTTTATGTCAAATGGAAGTGTGGACCAATGGTTATACTCAAATAACTATTGTTTAGATTTCTTGCAAAGGTTGAATATAATGATAGACGTGGCATTTGCATTGGAATATCTCCATCACGGTTCTTTAATACCAGTGGTTCATTGTGATCTGAAGCCTAGTAATGTTTTACTGGATGAAAACATGGTTGCACATGTCAGCGATTTTGGCATTGCGAAGCTCTTAGATGAAGGACAATCTAAAACTCATACCGAGACCTTGGCTACTCTTGGCTACGTTGCACCAGAGTATGGATCAAAGGGAATTATTTCTGTCAAAGGAGATGTGTACAGTTATGGGATTATGTTAATGGAAATGTTCACAAGAAAGAAGCCAACGGATGATATGTTTGTGGCAGGAATGAGCTTGAAATATTGGATTAGTGACTCAATGCCCAATTCAATCATGGAAGTTGTGGATTCTAATTTAATACAACAATATGGGGAACAAATTAATGACATATTGGCTCACATATTATCTATTTTGGAACTAGCCTTGAGTTGTTGTGTAGATTCACCCGAGGCACGAATTACAATTACAGATGTCATTATGTCATTAACCAAAATCAAGACCCAATTTACATCCAATCTCTGA 3042 0.3794 MSRRNITTDEFALLAFKSSITLDPYHMISNWSTSSSFSLCNWVGVTCDWHHGRVKALNLSNMGLRGTISPQLGNLSFLVELNLHGNGFYGQLPQELFGLHRLKLLDLSNNEFVGGIPARVGDLSRLQQLNLGHNNLAGFIPQSLFNNSMLQFFDLSYNNLSSDLPSNICQGLPKLKLLYLFSNDLSGRIPTVWHQCKDLENLELSNNNFKKGRLPADIGNLTKLQYLYLVGNNLEGEIPVSLLNISSLKEVNLQGNNLNGSVPHEMCHQLPQLEAFSLYANQIEGSIPRSIGNCTSLKELYLGNNYLAGSTPTEIGDLRQLEIVSLGFNNLSGPIPSKLLNISTLTYLHIGHNSLSGILSANMGYNLPNLEELYLSHNQLVGNIPNGISNASKLIILSLSGNEFNGIIPNVFGDLMVLEILDIGENNLTPEFNFFTSLTSCRHLTHLGVSKNRLLSKLPKSIGNLSKSLEYFYADSCRIYGNIPLEIGNISNLMGLSLSENDINGPMPSTFKRLQKLQYLGLDYNGLQGSIIDELCEISSLSELYLTNNKLSGALPTCLGNMTFLRKTLSLAHNKLQGSIPASLGKMVSLSFLDLSHNLLSGGIPKSLESLAYLKYINFSYNKLQGEIPDGGPFKNFTAQSFMCNEALCGNPHLQVPPCSKQVRRRSVTKKLLIKCIPPLIVSIILIAACVILLQLKRKRVENPLERDLSTLRVPRRISYYEIVKATNGFSESNLLGKGSFGSVYRGMLSNGITVAIKVIDLDSEASSRSFDVECNAMRNLRHRNLVKIISSCSNVDLKSLVMEFMSNGSVDQWLYSNNYCLDFLQRLNIMIDVAFALEYLHHGSLIPVVHCDLKPSNVLLDENMVAHVSDFGIAKLLDEGQSKTHTETLATLGYVAPEYGSKGIISVKGDVYSYGIMLMEMFTRKKPTDDMFVAGMSLKYWISDSMPNSIMEVVDSNLIQQYGEQINDILAHILSILELALSCCVDSPEARITITDVIMSLTKIKTQFTSNL* 1014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00664 1013 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 270 432 - -
Rops4g00664 1013 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 433 663 - -
Rops4g00664 1013 ProSiteProfiles Leucine-rich repeat profile. 369 391 IPR001611 GO:0005515
Rops4g00664 1013 PANTHER OS04G0122200 PROTEIN 211 314 - -
Rops4g00664 1013 SMART serkin_6 730 1009 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g00664 1013 SMART LRR_typ_2 148 171 IPR003591 -
Rops4g00664 1013 SMART LRR_typ_2 221 245 IPR003591 -
Rops4g00664 1013 SMART LRR_typ_2 587 611 IPR003591 -
Rops4g00664 1013 SMART LRR_typ_2 270 294 IPR003591 -
Rops4g00664 1013 SMART LRR_typ_2 318 342 IPR003591 -
Rops4g00664 1013 SMART LRR_typ_2 538 561 IPR003591 -
Rops4g00664 1013 SMART LRR_typ_2 392 414 IPR003591 -
Rops4g00664 1013 SMART LRR_typ_2 75 99 IPR003591 -
Rops4g00664 1013 SMART LRR_typ_2 367 391 IPR003591 -
Rops4g00664 1013 SMART LRR_typ_2 123 147 IPR003591 -
Rops4g00664 1013 ProSitePatterns Serine/Threonine protein kinases active-site signature. 849 861 IPR008271 GO:0004672|GO:0006468
Rops4g00664 1013 Pfam Leucine rich repeat N-terminal domain 8 48 IPR013210 -
Rops4g00664 1013 ProSitePatterns Protein kinases ATP-binding region signature. 736 758 IPR017441 GO:0005524
Rops4g00664 1013 Pfam Protein kinase domain 731 999 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g00664 1013 Gene3D Phosphorylase Kinase; domain 1 712 805 - -
Rops4g00664 1013 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 190 269 - -
Rops4g00664 1013 Gene3D Ribonuclease Inhibitor 167 266 IPR032675 -
Rops4g00664 1013 Pfam Leucine rich repeat 319 380 IPR001611 GO:0005515
Rops4g00664 1013 Pfam Leucine rich repeat 247 307 IPR001611 GO:0005515
Rops4g00664 1013 Pfam Leucine rich repeat 124 185 IPR001611 GO:0005515
Rops4g00664 1013 Pfam Leucine rich repeat 540 600 IPR001611 GO:0005515
Rops4g00664 1013 FunFam Serine-threonine protein kinase plant-type 710 805 - -
Rops4g00664 1013 SMART LRR_sd22_2 367 386 - -
Rops4g00664 1013 SMART LRR_sd22_2 221 247 - -
Rops4g00664 1013 SMART LRR_sd22_2 441 467 - -
Rops4g00664 1013 SMART LRR_sd22_2 587 613 - -
Rops4g00664 1013 SMART LRR_sd22_2 318 344 - -
Rops4g00664 1013 Gene3D Transferase(Phosphotransferase) domain 1 806 1012 - -
Rops4g00664 1013 SUPERFAMILY L domain-like 312 645 - -
Rops4g00664 1013 SUPERFAMILY RNI-like 57 381 - -
Rops4g00664 1013 Gene3D Ribonuclease Inhibitor 366 667 IPR032675 -
Rops4g00664 1013 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 6 170 - -
Rops4g00664 1013 Gene3D Ribonuclease Inhibitor 6 166 IPR032675 -
Rops4g00664 1013 Gene3D Ribonuclease Inhibitor 267 365 IPR032675 -
Rops4g00664 1013 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 806 1013 - -
Rops4g00664 1013 SUPERFAMILY Protein kinase-like (PK-like) 706 1007 IPR011009 -
Rops4g00664 1013 ProSiteProfiles Protein kinase domain profile. 730 1010 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00664 Rops-Chr4 17599625 17609752 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00664 8 1009 Receptor kinase-like Gene Family AT3G47570 34.930 8.31e-174 533
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Rops4g00664 Pkinase 1.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00664 - - mtr:25481440 926.391