Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00660 ATGACTCAAATGAATGAGGTGCCACCATCATCATCTGCACAAGATGAAGCTGGCAACAAAGCCAACCAAAAAGTACCCTTTTACAAGTTATTCACTTTTGCGGATCAACTTGATGTGACATTGATGATCATTGGCACGATCTGTGCAATAGCTAATGGGGTGTCACAGCCACTCATGACTGTTATTCTTGGTAAGGTCATCAACACCTTTGGCTCCACGGATCCATCCAATACTGTAAAGGAAGTTTCTAAGCATTCTGATATAAGGTTCATTGTCTTCAATGCTCTAGAGGTATCATGTTGGATGGTGACAGGAGAAAGACAAGCCGCAAGGATCCGTGGCTTGTACTTGAAAGCTATACTAAAGCAAGACATTGCCTTCTTTGACACCGAAACAACAACCGGAGAGGTAATTGGGAGAATGTCTGGTGACACCATTCTCATTCAAGATGCCATGGGAGAAAAGGTTGGGAAGTTTATTCAACTTGCTTCAGTTTTTGTTGGTGGCTTTGTGGTTGCCTTTATAAAAGGATGGAGACTTGCTGTAGTTTTGCTTGCATGCATGCCTTGTGTGGTAATAGCTGGTGCAGTCATGTCCATATTGATGGCCAAATTGTCAAGTAGAGGGCAAGCTGCTTATGCAGAAGCAGGAAATGTTGTTGACCAAACAGTGGGAGCCATTAGAACAGTTGCATCTTTCACTGGGGAGAAAAAAGCAATAGAAAAGTATAATAGCAAGTTAAAAGTTGCTTATAATTCAATGGTTCAACAAGGGATAGCCACAGGGTCATGTTTGGGAGTGCTTTTGTTGATTATCTTCTGCACCTATGGACTTGCCATGTGGTATGGTTCCAAAATGGTTATCAAGGAAGGATATAATGGTGGAACCGTCATCAATGTAATCATAGCTCTCATGACTGGTGGAATGTCACTTGGTCAAACATCCCCAAGCCTCAATGCATTTGCTGCAGGCCAAGCAGCAGCATATAAGATGTTTGGGACAATTAAAAGAAAGCCTAAAATTGATGCTTATGACACAAGTGGTGTTGTCTTGGAAAGCATAAAGGGAAATATTGAACTCATAGATGTTTACTTCAGCTACCCTGCAAGGCGAGATGTGCAAATCTTTGCTGGATTCTCATTATCTGTTCCCAATGGCACAACTGCTGCTTTGGTGGGTCAAAGTGGAAGTGGGAAGTCCACTGTAATTAGTTTATTAGAAAGATTTTATGATCCTGATGTTGGAGAAGTACTCATAGATGGTGTGAATTTGAAGAGTTTTCAACTTAGATGGATAAGAGAACAAATAGGGTTGGTTAGTCAAGAACCTATCTTGTTTACAACTAGTATCAAAGAGAACATAGCATATGGAAAAGAAGGAGCAACTGATGAAGAGATAACAAGAGCAATAACACTTGCCAATGCCAAAAAGTTCATTGACAAGCTGCCTCAGGGCCTTAACACAATGGCAGGGCAAAATGGGACTCAACTTTCTGGTGGGCAAAAGCAAAGAATTGCAATTGCAAGGGCAATTTTGAAGAATCCAATAATCCTTCTTCTTGATGAAGCAACAAGTGCATTGGATGTTGAATCTGAACGTATTGTTCAAGAAGCATTAGAAAATGTTATGTCGAAAAGGACTACTATAATTGTTGCACATCGTTTGACAACTATTAGAAATGCTAACACCATAGCAGTGGTTCATCAGGGCAAAATTGTGGAGAAAGGAACCCATGATGAGTTAATCAAGGATGTTGATGGTGCTTATTCTCAACTTATTCGTCTACAAGAAGGAGAAAAAGAAGCTGAAAGTAGCCAGAAGTTAGAAGAAGATAAGACAAGTAACAGTTTCAATTTAGATAGTCATTTGGCTAGATCTTCCACCCATAGAACATCCTTTGTGAGATCAATAAGTCAAAGTTCATCAAGGAGTCAACACTCCCAGACACTTAGCTTTGCTCTTCCTCATCAAAGTGGAGAAATAGAAAATGTGGATATTGAACAAAGTCAAGTTGACAATAAGAAGTCTAGAAAGGTTTCTATAATGCGTTTGGCATATTTAAACAAGCCTGAGGCTCTTATCTTACTATTTGGATCCATTGCTGCAATAATACATGGTTTAGTGTTCCCTATATTTGGCCTCTTGTTTTCATCAGCCATTACTATGTTCTTTAAACCTCCAGAACAGCAGCAGAAAGATTCAAAGTTCTGGGCACTTCTATATATGGGTTTAGGCTTAGTCACTCTAGTGGTTATACCATTGCAAAATTACTTTTTTGGAGTTGCTGGTGGAAAACTTATAGAAAGAATTCGTTCAATGACATTTGAAAAGGTTGTGCATCAAGAAATCAGTTGGTTTGATGACCCTGCAAATTCAAGTGGTGCAGTTGGTGCAAGATTATCTATTGATGCTTCAACAGTGAAAAGTCTTGTTGGTGATACATTGGCCCTCATTGTGCAAAACATATCAACAATTGTAGCAGGTCTAGTTATAGCATTCACTGCTAATTGGATTCTTGCTTTGATAATTCTGGCTGTGTCACCCTTGGTCCTTTTTCAAGGAGTTGCTCAGATGAAGTTTCTAAAAGGATTTAGTGCCGATGCCAAGATGACTTATGAAGAGGCAAGTCAGGTGGCAAATGATGCTGTCAGTGGCATAAGAACCATTGCAACATTTTGTGCTGAGTCAAAGGTGATGGAATTGTATGAGAAGAAATGTGCAGGGGCAAAGACACAAGGTGTTCGGTTGGGGCTTATTAGTGGTGCTGGATTTGGTTTCTCTTTTCTAGCTTTATACTGCACAAATGCTTTTTGTTTCTACATTGGATCTGTTCTTGTGCAACATGGGAAAGCAACTTTTGCTGAGGTTTTCAAGGTTTTCTTTTGTATAACAATTACAGCAATTGGTGTTTCCCAAACTAGTTCTTTGGCACCAGACACTAATAAGGCCAAAGATTCCACAGCTTCAATATTTGAAATTCTTGATAGCAAACCAATTATTGACTCCAGCAGCAATGAGGGTACAACACTAGAAACAGTTGTTGGTGATATTGAACTTCAACACATCAGCTTTAATTACCCAACAAGACCTCATATTCAAATTTTCAAAGATTTGAGTCTAAGCATCCCTTCTGGAAAGACTGTTGCCTTGGTTGGAGAAAGTGGTAGTGGAAAATCAACAGTTATCAGCCTCTTGGAGAGATTTTACAACCCTGATTCTGGACAAATATTAGTAGATGGAGTGGATATCAAAAAGTTCAAACTAAGCTGGTTTAGACAGCAAATGGGTTTGGTTGGTCAAGAGCCTATTCTTTTCAATGAAAGCATTAGAGCCAATATAGCTTATGGCAAAGAGGAAGATGCTACAGAAAATGAGATAATTGCAGCAGCTAAAGCAGCAAATGCACACAGGTTCATAAGTTCTCTTCCAAATGGTTATGACACTTCTGTTGGAGAAAGAGGTACGCAATTATCAGGAGGACAAAAGCAACGTATTGCTATTGCAAGAGCCATGTTGAAAGATCCTAAAATCCTTTTGCTTGATGAGGCAACTAGTGCACTTGATGCTGAGTCAGAGCGTGTAGCTCAAGAGGCTTTGGATTCAGTTAGTGTGAATAGAACTACTGTTGTGGTAGCTCATCGTCTTACAACAATTAGAGGGGCTGATATTATAGCAGTGATTAAAAATGGGGTGGTTGCTGAAAAGGGAAGACATGAAGAGTTGATGAAGATTAATGATGGAGCTTATGCTTCTTTGGTAGCTCTACATTCTAGTGCATCATAA 3783 0.3955 MTQMNEVPPSSSAQDEAGNKANQKVPFYKLFTFADQLDVTLMIIGTICAIANGVSQPLMTVILGKVINTFGSTDPSNTVKEVSKHSDIRFIVFNALEVSCWMVTGERQAARIRGLYLKAILKQDIAFFDTETTTGEVIGRMSGDTILIQDAMGEKVGKFIQLASVFVGGFVVAFIKGWRLAVVLLACMPCVVIAGAVMSILMAKLSSRGQAAYAEAGNVVDQTVGAIRTVASFTGEKKAIEKYNSKLKVAYNSMVQQGIATGSCLGVLLLIIFCTYGLAMWYGSKMVIKEGYNGGTVINVIIALMTGGMSLGQTSPSLNAFAAGQAAAYKMFGTIKRKPKIDAYDTSGVVLESIKGNIELIDVYFSYPARRDVQIFAGFSLSVPNGTTAALVGQSGSGKSTVISLLERFYDPDVGEVLIDGVNLKSFQLRWIREQIGLVSQEPILFTTSIKENIAYGKEGATDEEITRAITLANAKKFIDKLPQGLNTMAGQNGTQLSGGQKQRIAIARAILKNPIILLLDEATSALDVESERIVQEALENVMSKRTTIIVAHRLTTIRNANTIAVVHQGKIVEKGTHDELIKDVDGAYSQLIRLQEGEKEAESSQKLEEDKTSNSFNLDSHLARSSTHRTSFVRSISQSSSRSQHSQTLSFALPHQSGEIENVDIEQSQVDNKKSRKVSIMRLAYLNKPEALILLFGSIAAIIHGLVFPIFGLLFSSAITMFFKPPEQQQKDSKFWALLYMGLGLVTLVVIPLQNYFFGVAGGKLIERIRSMTFEKVVHQEISWFDDPANSSGAVGARLSIDASTVKSLVGDTLALIVQNISTIVAGLVIAFTANWILALIILAVSPLVLFQGVAQMKFLKGFSADAKMTYEEASQVANDAVSGIRTIATFCAESKVMELYEKKCAGAKTQGVRLGLISGAGFGFSFLALYCTNAFCFYIGSVLVQHGKATFAEVFKVFFCITITAIGVSQTSSLAPDTNKAKDSTASIFEILDSKPIIDSSSNEGTTLETVVGDIELQHISFNYPTRPHIQIFKDLSLSIPSGKTVALVGESGSGKSTVISLLERFYNPDSGQILVDGVDIKKFKLSWFRQQMGLVGQEPILFNESIRANIAYGKEEDATENEIIAAAKAANAHRFISSLPNGYDTSVGERGTQLSGGQKQRIAIARAMLKDPKILLLDEATSALDAESERVAQEALDSVSVNRTTVVVAHRLTTIRGADIIAVIKNGVVAEKGRHEELMKINDGAYASLVALHSSAS* 1261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00660 1260 Gene3D ABC transporter type 1, transmembrane domain 660 1005 IPR036640 GO:0005524|GO:0016020
Rops4g00660 1260 FunFam ABC transporter B family member 1 348 597 - -
Rops4g00660 1260 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 358 594 IPR003439 GO:0005524
Rops4g00660 1260 Pfam ABC transporter transmembrane region 696 967 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops4g00660 1260 Pfam ABC transporter transmembrane region 42 308 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops4g00660 1260 CDD ABC_MTABC3_MDL1_MDL2 358 596 - -
Rops4g00660 1260 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1007 1254 IPR027417 -
Rops4g00660 1260 MobiDBLite consensus disorder prediction 600 624 - -
Rops4g00660 1260 SMART AAA_5 385 577 IPR003593 GO:0016887
Rops4g00660 1260 SMART AAA_5 1044 1237 IPR003593 GO:0016887
Rops4g00660 1260 Gene3D - 1008 1259 IPR027417 -
Rops4g00660 1260 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 696 982 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops4g00660 1260 Pfam ABC transporter 379 525 IPR003439 GO:0005524
Rops4g00660 1260 ProSitePatterns ABC transporters family signature. 497 511 IPR017871 GO:0005524|GO:0016887
Rops4g00660 1260 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 91 323 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops4g00660 1260 CDD ABC_MTABC3_MDL1_MDL2 1017 1253 - -
Rops4g00660 1260 SUPERFAMILY ABC transporter transmembrane region 29 339 IPR036640 GO:0005524|GO:0016020
Rops4g00660 1260 SUPERFAMILY ABC transporter transmembrane region 683 998 IPR036640 GO:0005524|GO:0016020
Rops4g00660 1260 MobiDBLite consensus disorder prediction 600 616 - -
Rops4g00660 1260 Pfam ABC transporter 1036 1185 IPR003439 GO:0005524
Rops4g00660 1260 PANTHER ABC TRANSPORTER B FAMILY 10 597 IPR039421 -
Rops4g00660 1260 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1017 1254 IPR003439 GO:0005524
Rops4g00660 1260 CDD ABC_6TM_Pgp_ABCB1_D1_like 42 319 - -
Rops4g00660 1260 FunFam ABC transporter B family member 1 1007 1257 - -
Rops4g00660 1260 CDD ABC_6TM_Pgp_ABCB1_D2_like 685 1000 - -
Rops4g00660 1260 FunFam ABC transporter B family member 1 675 983 - -
Rops4g00660 1260 FunFam ABC transporter B family member 9 29 353 - -
Rops4g00660 1260 ProSitePatterns ABC transporters family signature. 1157 1171 IPR017871 GO:0005524|GO:0016887
Rops4g00660 1260 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 348 596 IPR027417 -
Rops4g00660 1260 Gene3D - 348 597 IPR027417 -
Rops4g00660 1260 Gene3D ABC transporter type 1, transmembrane domain 29 619 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00660 Rops-Chr4 17555725 17562620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00660 8 1256 Calmodulin-binding Proteins AT2G36910 45.333 0.0 1056
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00660 K05658 - gmx:100801771 1937.92