Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00654 ATGCATGGGAAAAAGGACCAAGAGCATATAAGGAAAGGGCCATGGAAAGCAGAGGAAGATGAGGTGCTACTGAACCATGTGAAGAAGTATGGTCCAAGAGATTGGAGCTCCATTCGATCCAAGGGTCTTCTTCAAAGGACTGGCAAGTCTTGTCGTCTTCGTTGGGTCAATAAGCTTCGACCAAACCTCAAGAATGGGTGCAAGTTTTCACTAGAGGAAGAGAGGGTTGTCATAGAGTTGCAGGCACAATTTGGGAACAAGTGGGCTAAGATTGCATCATATTTGCCAGGGAGAACAGACAATGATGTAAAAAATTTCTGGAGCAGTAGGCAAAAGAGGTTGGCTAGGATTCTGCAGACATCAGCAACAACCCCTAAATCACAGAAAAATAAAACTAAAGTTCCTACCTTTCTTGATGTTCCAACTTTGGAGGCTCCTAAGTTCAGTTCTTCATCAGAGGGAGAATCATCATCAAAGCCTCAGTCCTGCTCCTTATCTTGCATTGATAATTCTGAGGTTATCAAAATGGTGCCATTACCAGATCTTATAAAGTCTGAGCTACCTAGTTCTGACACAAGCCATGTTGAACAAGAGTTTACCCCTTTTGAGAGCTATAAAAGCACTGAACAGATTCCCTTCCCTCAGATTCCAGAACTCCCAACTGATCTTACATTCTCAATGGGAAGCCAAGATCTATTGGCTAGAATTGATGAGCCAAATTTTATTGATGTTTTCGGCCCTTTGGATGCATCTGAGTTTGGAATGGGTCCACAATATCCTATTGGGTTCCCTTTCTTTGATCCATCAGGAAGTTGCAGAATTGGGACAAGGGATATAATTGATAACTCCAAAAACAATGATAGCTTCTTTGATGATTTCCCAGAGGACATGTTTGATCAAATAGAGCCACCTACAAGCCCATCAAAGTTCTGA 933 0.4212 MHGKKDQEHIRKGPWKAEEDEVLLNHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFSLEEERVVIELQAQFGNKWAKIASYLPGRTDNDVKNFWSSRQKRLARILQTSATTPKSQKNKTKVPTFLDVPTLEAPKFSSSSEGESSSKPQSCSLSCIDNSEVIKMVPLPDLIKSELPSSDTSHVEQEFTPFESYKSTEQIPFPQIPELPTDLTFSMGSQDLLARIDEPNFIDVFGPLDASEFGMGPQYPIGFPFFDPSGSCRIGTRDIIDNSKNNDSFFDDFPEDMFDQIEPPTSPSKF* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00654 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 63 IPR017930 -
Rops4g00654 310 Gene3D - 4 65 - -
Rops4g00654 310 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Rops4g00654 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 115 IPR017930 -
Rops4g00654 310 FunFam MYB transcription factor 12 64 - -
Rops4g00654 310 Gene3D - 67 136 - -
Rops4g00654 310 SMART sant 11 61 IPR001005 -
Rops4g00654 310 SMART sant 65 113 IPR001005 -
Rops4g00654 310 ProSiteProfiles Myb-like domain profile. 7 59 IPR001005 -
Rops4g00654 310 FunFam Transcription factor GAMYB 67 136 - -
Rops4g00654 310 Pfam Myb-like DNA-binding domain 15 74 - -
Rops4g00654 310 CDD SANT 68 107 IPR001005 -
Rops4g00654 310 CDD SANT 14 59 IPR001005 -
Rops4g00654 310 ProSiteProfiles Myb-like domain profile. 68 111 IPR001005 -
Rops4g00654 310 PANTHER TRANSCRIPTION FACTOR DUO1 4 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00654 Rops-Chr4 17445488 17447610 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00654 1 307 MYB Transcription Factor Family AT3G60460 50.470 5.08e-89 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops4g00654 Myb_DNA-bind_6 6.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00654 K09422 - gmx:100805384 507.294