Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00640 ATGTGGAATGTACAACGAGAACCCTCTCTCCTATTGGGTCTCCATGGGTGGCTTCAACTTGCCATCGATTGTGGCTGGAACGACCATTTCGACCCTTCACTCCTTCACCCCCGCTCCACAAGAGCATCAACCATAGGTGCTGTCTTGTTTTCACATCCGGATACACTTCACCTTGGTGCACTCCCATATGCTATGAAGCAACTTGGACTTTCGGCCCCTGTTTATTCAACTGAGCCTTTCTACAAATTGGGCATTCTTACTATGCAAGGGAGAGAAATCTTTCCTTACCACAACAAGATTAAGCATGAGGCAGTATGTAATTTTAGACCATATAGTTGCCCTTATGATGGATCCGAGTGTCCCGTCGTTGGAGATATTCCTTTCCTCGTTGCTCACTTGAAGGACGATCGTAAGCCACACAATGCGATGGGCCAACAGTGGCGTGGGGAACACAACTTGGGAAACTACAACACGATGGGCCAACAGTGGCATGGGGAGCACAACTTGGGGAGCTACAACGTGATGGGAGCATGGACTAAACTGATTTCTTTTGGGCAAGTTTGGTGGGGTCCACGAGAGAAGAGGTTGGTGATTATAAAAAGAGAAGGCTTAGATCACACCAGGGATCTTTTTTGGGAAGGGCAAGCACCGAGAGAAAGAGGGGAGAAGCTTAAAGCAAGCAAAAATTTTGGTGTCACATAG 702 0.4758 MWNVQREPSLLLGLHGWLQLAIDCGWNDHFDPSLLHPRSTRASTIGAVLFSHPDTLHLGALPYAMKQLGLSAPVYSTEPFYKLGILTMQGREIFPYHNKIKHEAVCNFRPYSCPYDGSECPVVGDIPFLVAHLKDDRKPHNAMGQQWRGEHNLGNYNTMGQQWHGEHNLGSYNVMGAWTKLISFGQVWWGPREKRLVIIKREGLDHTRDLFWEGQAPRERGEKLKASKNFGVT* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00640 233 FunFam E3 ubiquitin-protein ligase SINAT3 89 133 - -
Rops4g00640 233 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 2 18 89 IPR027075 GO:0005847|GO:0006378|GO:0006379
Rops4g00640 233 Pfam Seven in absentia protein family 90 137 IPR018121 GO:0005737|GO:0006511|GO:0007275
Rops4g00640 233 SUPERFAMILY TRAF domain-like 92 152 - -
Rops4g00640 233 Pfam Metallo-beta-lactamase superfamily domain 19 89 IPR001279 -
Rops4g00640 233 SUPERFAMILY Metallo-hydrolase/oxidoreductase 20 89 IPR036866 -
Rops4g00640 233 Gene3D Classic Zinc Finger 111 138 - -
Rops4g00640 233 Gene3D - 5 110 IPR036866 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00640 Rops-Chr4 17131713 17133001 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00640 91 229 C3H Transcription Factor Family AT2G41980 34.783 5.26e-18 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00640 K14402 - egr:104424427 124.79