Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00624 ATGGTGTCAGGTTCTGGTATGTGCGCAAAGAGGGTTGTGGTGGACGCTCGTCACCACATGCTTGGTCGTCTCGCATCGATCGTGGAAAAGGAACTGCTCAATGGCCAAAAGGTTGTTGTGGTTAGGTGTGAGGAGATTTGCATCTCTGGTGGACTCGTAAGATTTGCTCATGGTCCCATTCATTTTCGTGCCCCTTCCAAGATCTTCTGGCGCACCGTTCGTGGAGTGATTCCACATAAGACTAAGCGTGGGGAAGCTGCTCTTGCTCGATTGAAGGTTTTTGAGGGTATCCCTCCTCCTTATGACAAGATGACGAGGATGGTTGTCCCTGATGCTTTGAAGGACATTCAAGAAGAATTCAGGAATCGGGAAGCTAACGCTGCATCACAAGGAAAGCCAAAGAGCCTATGGGAGGAATTGGCGCCACCATTTCAGCTGGTGGCACTGAAAGTGTATCACCAAGCATGTAGACAAGTCACTATGCTGCAGAATTCAATAGGAGCCTTTTCCTTTGATTTTGTATTTGGAGTAGGTTCTTTGGCTTCTCAGGTTCTCATCACCACTTAA 567 0.4797 MVSGSGMCAKRVVVDARHHMLGRLASIVEKELLNGQKVVVVRCEEICISGGLVRFAHGPIHFRAPSKIFWRTVRGVIPHKTKRGEAALARLKVFEGIPPPYDKMTRMVVPDALKDIQEEFRNREANAASQGKPKSLWEELAPPFQLVALKVYHQACRQVTMLQNSIGAFSFDFVFGVGSLASQVLITT* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00624 188 CDD Ribosomal_L13 12 97 IPR005822 GO:0003735|GO:0005840|GO:0006412
Rops4g00624 188 PANTHER RIBOSOMAL PROTEIN L13 2 119 IPR005822 GO:0003735|GO:0005840|GO:0006412
Rops4g00624 188 Pfam Ribosomal protein L13 50 99 IPR005822 GO:0003735|GO:0005840|GO:0006412
Rops4g00624 188 Pfam Ribosomal protein L13 10 50 IPR005822 GO:0003735|GO:0005840|GO:0006412
Rops4g00624 188 Gene3D Ribosomal protein L13 7 129 IPR036899 GO:0003735|GO:0005840|GO:0006412
Rops4g00624 188 Hamap 50S ribosomal protein L13 [rplM]. 11 114 IPR005822 GO:0003735|GO:0005840|GO:0006412
Rops4g00624 188 SUPERFAMILY Ribosomal protein L13 10 114 IPR036899 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00624 Rops-Chr4 16639587 16641023 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00624 1 114 Cytoplasmic Ribosomal Protein Gene Family AT3G24830 76.154 5.30e-68 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00624 K02872 - gmx:100813340 207.994