Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00613 ATGGGTGAGAAAGATGATGGCTTGAATTTGAGTTTGGGTTTGAGTTTGAGATGTGGAGAACATGCAAATAATAACAATAACAGTAATCAGGTTCCTTTGCACAAGCCTCCTCAATCAGTTCCAAATCAAAGGGGTTCCTTCAATAACTTGTTAAATTTTCATGATCGGAGCTCAGAGCACAGGTCGTTCCTCCGTGTGAACTCACCGAGGCCTTCCCCGGCGACGGTGGCATGCGACGACGAGAACGGCGTTTCGTCGCCGAACAGCACCGTGTCGAGTATCAGCGGGAAGCGCAGCGATAGAGAGGGAAATGGAGATGAAAACGACGCCGTTGAGAGGACCTCGTGTTCTCGCGGTGGAAGCGAAGACGATGACGGCGGAGGTTGCGGCGGAGAAGGCGACGGCGACAGTTCGAGGAAGAAGTTAAGGTTGTCGAAGGAACAGTCCATGATTCTAGAAGAAACCTTCAAGGAACACAACACACTCAATCCGAAACAAAAGCAAGCATTGGCAAAGCAATTGAATCTGAGGCCAAGACAGGTGGAGGTGTGGTTTCAAAACAGAAGAGCAAGGACTAAGTTGAAGCAAACTGAAGTGGATTGTGAATACTTGAAGAGATGCTGTGAGAATCTAACTGAAGAGAATAGGAGATTGCATAAGGAAGTGCAAGAGCTAAGGGCATTGAAATTGTCCCCACAACTCTACATGCACATGAACCCTCCCACCACTCTTACAATGTGCCCTTCATGCGAGCGTGTTGCTGTCTCATCATCCTCATCGGCTGCCGCCCCAGCTCCGGCTAATCACAACCCGTTAAACCCGAGCATCCAACGGCCGGTACCGGTGAACCCTTGGGCAGCGATGTCTATCCAACACTGTTCCCAGCCATAG 891 0.4983 MGEKDDGLNLSLGLSLRCGEHANNNNNSNQVPLHKPPQSVPNQRGSFNNLLNFHDRSSEHRSFLRVNSPRPSPATVACDDENGVSSPNSTVSSISGKRSDREGNGDENDAVERTSCSRGGSEDDDGGGCGGEGDGDSSRKKLRLSKEQSMILEETFKEHNTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLHKEVQELRALKLSPQLYMHMNPPTTLTMCPSCERVAVSSSSSAAAPAPANHNPLNPSIQRPVPVNPWAAMSIQHCSQP* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00613 296 Gene3D - 130 200 - -
Rops4g00613 296 Pfam HD-ZIP protein N terminus 1 102 IPR006712 GO:0005634
Rops4g00613 296 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 10 268 - -
Rops4g00613 296 SMART halz 195 238 IPR003106 GO:0006355|GO:0043565
Rops4g00613 296 SUPERFAMILY Homeodomain-like 125 196 IPR009057 -
Rops4g00613 296 Pfam Homeobox associated leucine zipper 195 229 IPR003106 GO:0006355|GO:0043565
Rops4g00613 296 Pfam Homeodomain 139 193 IPR001356 GO:0003677
Rops4g00613 296 MobiDBLite consensus disorder prediction 99 120 - -
Rops4g00613 296 MobiDBLite consensus disorder prediction 21 53 - -
Rops4g00613 296 Coils Coil 208 228 - -
Rops4g00613 296 MobiDBLite consensus disorder prediction 79 98 - -
Rops4g00613 296 ProSiteProfiles 'Homeobox' domain profile. 135 195 IPR001356 GO:0003677
Rops4g00613 296 SMART HOX_1 137 199 IPR001356 GO:0003677
Rops4g00613 296 MobiDBLite consensus disorder prediction 21 141 - -
Rops4g00613 296 FunFam Homeobox-leucine zipper protein 18 127 200 - -
Rops4g00613 296 ProSitePatterns 'Homeobox' domain signature. 170 193 IPR017970 GO:0000981|GO:0006355
Rops4g00613 296 CDD homeodomain 139 196 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00613 Rops-Chr4 16345589 16348789 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00613 37 292 Homeobox Transcription Factor Family AT3G60390 63.333 3.89e-98 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Rops4g00613 HD-ZIP_N 2.8e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00613 K09338 - gmx:100798480 405.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g00613 4 16345589 16348789 Rops4g00613 4 16345589 16348789 ECH