Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00592 ATGAATTTTCCACATCTTGAAGTTACTACCCTTGAATCCATTAGAAGCTACCTCCTGGATGATGAAGATTTCGGTGTTCTCACGGCGATTTCCGGCGGTGCTCCGGCCATCAACCACGGCTCTAACTCTTCCTCCACGGAGAGTGGAAGTGAATCAACGTCCCCCACCACCACCCTTTACCATAACGTGGTAAATTCTCCATTAGTTTTGCTGGAAAATACATTTCCAGTGGCGCGTGAGATCCACGCGCAGCCTTGTTGGCGGATATACGAGGAAGTAAAGTCCACTCCCAACACCCTTTATGATAACGTTGTCAACTCCTCATTGGGAAAATCAGAGAACATTAATACAGAGACACGTGAGTCCCACGTGCCATCATCATGGCGGAGGTACAAGGGTGTGAGGCGTAGGCCGTGGGGGAAGTTTGCGGCGGAGATAAGAGATCCAAAGAAAAACGGCGCAAGGGTTTGGCTTGGGACTTATGAGTCGGCTGAGGATGCGGCTTTGGCTTATGACCGAGCCGCTTTCAAAATGCGCGGCTCAAAAGCCAAGCTGAATTTTCCACATTTGATTGGCTCTGATGTTACTGAGTCGGTAATGGTGACGGCTAAGCGGCTTTTGCCGGAGCCGTTTTCAACGAATCTGGCTTTGGAGCCAAAAACGAAAATGAGCCGAGTCACTGTGCTTGACACGTCAGAGAAGTGGGATGTGAGATTTTATGAGCAAGTGTTGAAGGATAATACAAACAATTATCTAGTGAGGTTATTGTAG 771 0.4838 MNFPHLEVTTLESIRSYLLDDEDFGVLTAISGGAPAINHGSNSSSTESGSESTSPTTTLYHNVVNSPLVLLENTFPVAREIHAQPCWRIYEEVKSTPNTLYDNVVNSSLGKSENINTETRESHVPSSWRRYKGVRRRPWGKFAAEIRDPKKNGARVWLGTYESAEDAALAYDRAAFKMRGSKAKLNFPHLIGSDVTESVMVTAKRLLPEPFSTNLALEPKTKMSRVTVLDTSEKWDVRFYEQVLKDNTNNYLVRLL* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00592 256 ProSiteProfiles AP2/ERF domain profile. 130 188 IPR001471 GO:0003700|GO:0006355
Rops4g00592 256 Pfam AP2 domain 130 180 IPR001471 GO:0003700|GO:0006355
Rops4g00592 256 SMART rav1_2 130 194 IPR001471 GO:0003700|GO:0006355
Rops4g00592 256 SUPERFAMILY DNA-binding domain 130 189 IPR016177 GO:0003677
Rops4g00592 256 Gene3D AP2/ERF domain 129 189 IPR036955 GO:0003700|GO:0006355
Rops4g00592 256 PANTHER DNA-BINDING DOMAIN 62 204 IPR044808 GO:0003700|GO:0009873
Rops4g00592 256 PRINTS Ethylene responsive element binding protein signature 170 190 IPR001471 GO:0003700|GO:0006355
Rops4g00592 256 PRINTS Ethylene responsive element binding protein signature 131 142 IPR001471 GO:0003700|GO:0006355
Rops4g00592 256 MobiDBLite consensus disorder prediction 35 57 - -
Rops4g00592 256 FunFam Ethylene-responsive transcription factor 2 129 189 - -
Rops4g00592 256 CDD AP2 130 190 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00592 Rops-Chr4 15973254 15974024 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00592 117 210 AP2-EREBP Transcription Factor Family AT2G44840 70.526 6.51e-42 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops4g00592 AP2 9.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00592 K09286 - twl:119981797 151.369
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g00592 4 15973254 15974024 Rops4g00592 4 15973254 15974024 ECH