Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00591 ATGCTCACTACAATGTCATGTGATTTTTCTTCATTGGAATCTATTCAACACTACATGCTTGATCTTGAACATGATTCTTCTCACACTCTCATGAATGGTTCCAACTATGAAACTTGCCATTCATTATCGTACAATGCATTTCCAAGTCCTACGTTCGACTCTAGTGGTTCCCCACATGTTGTTAGTAACTTGGACGGTGTTGGTGACGTGAAAAAATCATCCACGGAAGCGCGTGAAGCTCACGCGCCGCCAAGATGGAAGCACTACAGGGGTGTGAGGCGTAGGCCGTGGGGGAAGTTCGCGGCGGAGATAAGAGATCCGAAGAAGAATGGTGGTAGGGTTTGGCTTGGGACTTATGAGACTGAAGAGGAAGCTGGTTTGGCTTATGATAGAGCTGCTTTCAAGATGCGTGGTAGAAAAGCCAAGCTCAATTTTCCACACCTCATTGGATCCGAAGCACTAGGTTCGGAGTCACAAGGATCAAAGAAGAGGAAGAAGAACCTAGTTGATGTGTTGAATAGGTTAGCCAAGTGTAGAAGACAAGTACAGGTGTTTGAAATGGGTTCCTTGATGTTGATCAATGGTGGAACATAA 594 0.4512 MLTTMSCDFSSLESIQHYMLDLEHDSSHTLMNGSNYETCHSLSYNAFPSPTFDSSGSPHVVSNLDGVGDVKKSSTEAREAHAPPRWKHYRGVRRRPWGKFAAEIRDPKKNGGRVWLGTYETEEEAGLAYDRAAFKMRGRKAKLNFPHLIGSEALGSESQGSKKRKKNLVDVLNRLAKCRRQVQVFEMGSLMLINGGT* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00591 197 PRINTS Ethylene responsive element binding protein signature 89 100 IPR001471 GO:0003700|GO:0006355
Rops4g00591 197 PRINTS Ethylene responsive element binding protein signature 128 148 IPR001471 GO:0003700|GO:0006355
Rops4g00591 197 CDD AP2 87 148 IPR001471 GO:0003700|GO:0006355
Rops4g00591 197 Gene3D AP2/ERF domain 87 147 IPR036955 GO:0003700|GO:0006355
Rops4g00591 197 ProSiteProfiles AP2/ERF domain profile. 88 146 IPR001471 GO:0003700|GO:0006355
Rops4g00591 197 SMART rav1_2 88 152 IPR001471 GO:0003700|GO:0006355
Rops4g00591 197 SUPERFAMILY DNA-binding domain 88 147 IPR016177 GO:0003677
Rops4g00591 197 PANTHER DNA-BINDING DOMAIN 54 157 IPR044808 GO:0003700|GO:0009873
Rops4g00591 197 FunFam Ethylene-responsive transcription factor 2 87 147 - -
Rops4g00591 197 Pfam AP2 domain 88 138 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00591 Rops-Chr4 15958424 15959017 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00591 54 151 AP2-EREBP Transcription Factor Family AT2G44840 67.327 9.25e-39 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops4g00591 AP2 3.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00591 K09286 - gmx:100805648 245.743
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g00591 4 15958424 15959017 Rops4g00591 4 15958424 15959017 ECH
Rops4g00591 4 15958424 15959017 Rops8g00786 8 16208725 16209333 PCT