Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00587 ATGATGAACACTCGTGTTTGTGACATCAGTATGAAGAATGCCCTTGATCACTTAGAACACACTGAAACGACGTCGTTTCACGATGCTCCTGCGACGGTCACGGAGGCACCGGCGTTCTCCCAGAGTTCAAGTTTCCGGAACATTTTCTTGACGGACAATTGGTCAGAGCTGCCGCTGAAGGAGGACGATGCCGAGGACATGGTCATCTACAGCGCCTTACGTGAAGCCACCACCACAGGGTGGTTTCCGACCAACAAAAATGGCCTGAACAATGTTGCCACAGTGGTGAAAATGGATAATAAGGGTGAAAATAGTGGAATTACACAGGAGCGTGGGACTCACACGCCTCCGACGAAGGTGTGGAATTACCGTGGCGTGCGGAGGAGGCCGTGGGGGAAATATGCGGCGGAGATAAGGGATTCAAAGAGGAACGGTGCAAGAGTTTGGCTTGGGACTTATGAAACGGCTGAGGATGCGGCTTTGGCTTATGATCGAGTCGCGTTCAAAATGCGCGGCTCGAAAGCCAAGCTAAATTTCCCTCACTTAATCGGCTCAACAGCTGAGCCGGTTAAGGTCCCGCTCAAGCGGCGATCACCAGATCGGTCCTCGTCGTCAGGCCTATCATAG 627 0.5247 MMNTRVCDISMKNALDHLEHTETTSFHDAPATVTEAPAFSQSSSFRNIFLTDNWSELPLKEDDAEDMVIYSALREATTTGWFPTNKNGLNNVATVVKMDNKGENSGITQERGTHTPPTKVWNYRGVRRRPWGKYAAEIRDSKRNGARVWLGTYETAEDAALAYDRVAFKMRGSKAKLNFPHLIGSTAEPVKVPLKRRSPDRSSSSGLS* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00587 208 FunFam Ethylene-responsive transcription factor 2 122 181 - -
Rops4g00587 208 ProSiteProfiles AP2/ERF domain profile. 122 180 IPR001471 GO:0003700|GO:0006355
Rops4g00587 208 PRINTS Ethylene responsive element binding protein signature 123 134 IPR001471 GO:0003700|GO:0006355
Rops4g00587 208 PRINTS Ethylene responsive element binding protein signature 146 162 IPR001471 GO:0003700|GO:0006355
Rops4g00587 208 PANTHER DNA-BINDING DOMAIN 87 195 IPR044808 GO:0003700|GO:0009873
Rops4g00587 208 SMART rav1_2 122 186 IPR001471 GO:0003700|GO:0006355
Rops4g00587 208 SUPERFAMILY DNA-binding domain 123 181 IPR016177 GO:0003677
Rops4g00587 208 CDD AP2 122 182 IPR001471 GO:0003700|GO:0006355
Rops4g00587 208 Gene3D AP2/ERF domain 122 181 IPR036955 GO:0003700|GO:0006355
Rops4g00587 208 Pfam AP2 domain 123 172 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00587 Rops-Chr4 15909893 15910519 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00587 39 208 AP2-EREBP Transcription Factor Family AT2G44840 54.971 1.46e-61 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Rops4g00587 AP2 1.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00587 K09286 - gmx:100793366 273.092
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g00587 4 15909893 15910519 Rops4g00587 4 15909893 15910519 ECH