Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00581 ATGGAGAATAACGCATTCAAAGATGAAAACCTTATTGAAAACGAACAAGAAGTAATCGCTGAATCCTTTAATTGCTGCGTTTGCCTGGATTTATTATACAAGCCCATTGTGCTATCTTGTGGTCACGTATCGTGTTTCTGGTGTGTCCATAAATCAATGAATGGTTTGCGTGAGTCTCATTGTCCAATTTGTAGGCATCCGTACTATCACTTTCCAACAATCTGTCAAATGCTTCACTTTTTACTTCTTAAGATCTATCCTATTGCTTACAAGAGAAGAGAAAATCAGACACGTGAGGAAGAGGAGAAAATGGGCCTTTTCTCCCCTCAGTTTAATGCTTATACAGGTGGATCACAAGTTGTATTTGATCATCCTGGGAGCTCACCTTCCTCCGCTACTATAAATCAGGCATCGAACTCATGCAGCGTGGAATATTTTGAATGTACAGAGCAATCAGGGTCTGTGACTCATAAAGGAGATGAAGGCACCATCTATTCTGAACACACTTCCAACAGAACACCTGAAGTTATAGGGCCTCCTTTTGTTGAAGGAAAAAGATTGCCTCAGAATCAGCACAATCACAACCGAAAGTATTAG 597 0.4037 MENNAFKDENLIENEQEVIAESFNCCVCLDLLYKPIVLSCGHVSCFWCVHKSMNGLRESHCPICRHPYYHFPTICQMLHFLLLKIYPIAYKRRENQTREEEEKMGLFSPQFNAYTGGSQVVFDHPGSSPSSATINQASNSCSVEYFECTEQSGSVTHKGDEGTIYSEHTSNRTPEVIGPPFVEGKRLPQNQHNHNRKY* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00581 198 PANTHER UNCHARACTERIZED 16 154 - -
Rops4g00581 198 ProSiteProfiles Zinc finger RING-type profile. 25 65 IPR001841 -
Rops4g00581 198 SMART ring_2 25 64 IPR001841 -
Rops4g00581 198 SUPERFAMILY RING/U-box 19 75 - -
Rops4g00581 198 FunFam E3 ubiquitin-protein ligase PRT1 15 111 - -
Rops4g00581 198 Pfam Zinc finger, C3HC4 type (RING finger) 23 68 - -
Rops4g00581 198 MobiDBLite consensus disorder prediction 157 198 - -
Rops4g00581 198 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 109 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00581 Rops-Chr4 15682684 15691491 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00581 10 65 C3H Transcription Factor Family AT1G74990 38.596 3.71e-09 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00581 - - tpra:123920334 259.225