Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00558 ATGGCAGATTCTGGATCCAAACTCGAAATTGAAGAGAAATCATGGCATCTTCTAGCGATTTTACTACGAATCGGTCATCCTATTCACTTCACACATCTCGCTTCGTTGTCTCGATTCTTCACTGTATCACCGGAATTTGTACATCACCTCGCTTCTCTTCCTTCTTCTCCTCTCTCCGTTAGGGATAACGGACTCGTAACGCCCTCCGTCACCGCCATTTACGCTCTCGGAAGGTTTTTCTCGTTACATTTGCCGGATTCTCAACGGTTCAGGAAACGGAAGTTGTTTTTCTCATCCACCGAAGATGGAAGAGATCGGAAGAGATTAGCGATTAGTAATGGAGCTCAAGAAATTTCCATCGAGAGTTTTGCTGATACTGCAAAGGCTATGATGATGGGAAGAAGTTTCCCTGCAATTAAATTCGAATCACAGCTTATGCTTAATGGGAATTCGATGATCCCATTGTGTATTGATACAAATGGAGTGTGTTCAGGTTGTCCTGCGCTAAAATTTGAACATAGGAAAGCTGATAATGATGCCAGCACAAGCATGTTTCAAGGAGAGATTTCTGGATCTGTGATCAAAGCTAGTGATAGTTTGCTCATGAATGGAAGTGACTTAACTTGTCAGAAGCTGGCGAGTATAGATAGATTTGTGGAATGTAATCTCTTTGTTGACCTTGCTCTGCCTACTAGTTTCCAAGATCCCTCGTTACGTAATGAGGGTGTTGTTGGTAGCAATAGCATTGGATTTGAGAAGAAAATGGATTGCTTTGATACATTTAGGCATGAATATCCCGAACAAAACATTATTCATCCTGTGGATGATGATGGTATTTGTAGAAGTGATACTTGCAAAGATCCAGTAAGAGAATCTAATGAAAATGAAGAAGTGGAAAATGGTTCAAAGAAAGAATTGGTTGGTTCTGACAAAGATGGAGAGAAAGAAGATGTTGCTCAGATGGTCAATCCTGCACTATGTGGAGAAGAACTAACTAAAGGTTTGGAACCAAAAAACAGTATCCATGTGTTAAATATGGACAAACACGAGACAGTGAGAAACATTGGGACTCAGTCTACCAATAAAATAGATCAGTCCTCTTCAAATCCAAAGCAGCTTCAGAAATCTTGTTCCATATTGAAGGGAGGACAGAAGAATGATCTACAATCAAAGACACAAATTCTCACGGAGTCACTAGCTTGTAATAAATTTGATAATGCTCCAAAAAATGTTGATCTATGTAAAAATGATCAGAAACTTATCACGAAGCACAAACTAAAGCAAAGCCGTAAAGAAAACATGGCAGAGTCAGAAGCTATTTCCACGGCTCCTAAGGTGGAGAAAAAAGCATATCCTTCTTTTGAAACGTTTACAATAGAGGAAGAAGAAGGTTCAGGTGGTTATGGCACTGTTTACCGCGCTCGAAGAACTACTGATGGAAAAAAACTTGCAATAAAATGTCCTCATAATAATGCTCATAAAAATCATGTAAATAATGAGCGGCATATGCTAGAGCGTTTTGGGGGTAAAAATTTCATAATTAAGTTTGAAGGTTCTTTCAAAAGTGGCAACAGTGACTGCTTTGTTTTAGAACATGTTGAGCATGACAGGCCTGAGGTTTTGAAAAAGGAAATTGATATAATTCAGCTTCAGTGGTATGCATATTGCATGTTCAGGGCCCTTGCATTCTTGCACAAAGAGGGAGTCGTTCACAGAGATGTTAAACCTGGAAACTTCCTTTTTTCTCGAAAGCTAAACAAAGGCTACCTTATTGACTTCAACCTTGCCATGGATTTAAAGCAGAAGTACAACACAGGAAGTAAATCAAAACCAAGCCTTGATGCATCCAGTAAAATTCCTCTCCCTTCCAGTTCTGCCCCAGTGGTCCAAGACAAGAACCTTGGAGGAAGCAAGTCTCTTACATCCAATAAAAGGGACTTGGCAGATTATAGGAAATATTCTGATCTTAATAGGCATGTGAAGCAAAAGGCTTATGCTGGTCCTCTAAAAAATTGTCCTGATAAGGCTGGTGGGAGTTTACTTAGAGCACAAGGAACAGATGGCTCGGGTATAACCTCTGCGAAAGATGTTACTAGCACTAGGACTGCTTCTGCAGAAAGGCTCAGGGAACCATTACCTTTCAAAGGAAGAAAGGAGCTTATTAGCCTTGTGCAAAATTCTATGCAATGTGCAGACAATAGTTCAATAAAAGGTCCTTCTTCTCAAAGGAAAAGAGTTACTGCTCCTTCAGGCAAGGTAGATGGCAAGATTGTTTATCTTACACCGATGCCTCTACATTCATCTACAGTTGCTGCGGGGTTATTAAGAAGCAAAGGAGATGGAAAACTTAAAAGAGACGGTTCATGCGTTGGAACCAAGGGATTCCGTGCCCCAGAGGTCTTGTTTAGGTCTCAGTTTCAGGGAACTAAGGTTGATATTTGGTCGGCTGGAGTTACTCTACTCTACATGGTGATCGGGAAAACTCCTTTCACGGGCGAACCAGAACAGAATATTAAAGAAATTGCCAAATTGCGGGGCAGTGAAGAGCTTTGGGAAGTGGCCAAGCTACATGACCGTGAAACATCTTTTCCATTGGAGTTACTTGATGACCGGTACTTACAATCATGGGACATAGAAAGCTGGTGCAAGATTCACACAAAGAGACCAGAATTTGTTGAGCAAGTCCCAAAATCATTATTTGATTTACTAGACAAGTGTCTAACTGTAAACCCAAGAAGTAGGATTAGTGTTGAAGAAGTTCTAAGGCATGAATTCTTTGCCTCTTGTAATGAGATCATGAGGAAACAAAGGATGATTAAACGAGGTCTTAGCTCAGACACTGCAACTTCGAACAATCTGAGATAA 2865 0.4045 MADSGSKLEIEEKSWHLLAILLRIGHPIHFTHLASLSRFFTVSPEFVHHLASLPSSPLSVRDNGLVTPSVTAIYALGRFFSLHLPDSQRFRKRKLFFSSTEDGRDRKRLAISNGAQEISIESFADTAKAMMMGRSFPAIKFESQLMLNGNSMIPLCIDTNGVCSGCPALKFEHRKADNDASTSMFQGEISGSVIKASDSLLMNGSDLTCQKLASIDRFVECNLFVDLALPTSFQDPSLRNEGVVGSNSIGFEKKMDCFDTFRHEYPEQNIIHPVDDDGICRSDTCKDPVRESNENEEVENGSKKELVGSDKDGEKEDVAQMVNPALCGEELTKGLEPKNSIHVLNMDKHETVRNIGTQSTNKIDQSSSNPKQLQKSCSILKGGQKNDLQSKTQILTESLACNKFDNAPKNVDLCKNDQKLITKHKLKQSRKENMAESEAISTAPKVEKKAYPSFETFTIEEEEGSGGYGTVYRARRTTDGKKLAIKCPHNNAHKNHVNNERHMLERFGGKNFIIKFEGSFKSGNSDCFVLEHVEHDRPEVLKKEIDIIQLQWYAYCMFRALAFLHKEGVVHRDVKPGNFLFSRKLNKGYLIDFNLAMDLKQKYNTGSKSKPSLDASSKIPLPSSSAPVVQDKNLGGSKSLTSNKRDLADYRKYSDLNRHVKQKAYAGPLKNCPDKAGGSLLRAQGTDGSGITSAKDVTSTRTASAERLREPLPFKGRKELISLVQNSMQCADNSSIKGPSSQRKRVTAPSGKVDGKIVYLTPMPLHSSTVAAGLLRSKGDGKLKRDGSCVGTKGFRAPEVLFRSQFQGTKVDIWSAGVTLLYMVIGKTPFTGEPEQNIKEIAKLRGSEELWEVAKLHDRETSFPLELLDDRYLQSWDIESWCKIHTKRPEFVEQVPKSLFDLLDKCLTVNPRSRISVEEVLRHEFFASCNEIMRKQRMIKRGLSSDTATSNNLR* 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00558 954 ProSitePatterns Serine/Threonine protein kinases active-site signature. 569 581 IPR008271 GO:0004672|GO:0006468
Rops4g00558 954 FunFam Kinase like protein 766 937 - -
Rops4g00558 954 MobiDBLite consensus disorder prediction 283 313 - -
Rops4g00558 954 ProSiteProfiles Protein kinase domain profile. 457 926 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g00558 954 SUPERFAMILY Protein kinase-like (PK-like) 454 946 IPR011009 -
Rops4g00558 954 FunFam Probable serine/threonine-protein kinase DDB_G0291918 449 615 - -
Rops4g00558 954 Gene3D Transferase(Phosphotransferase) domain 1 420 612 - -
Rops4g00558 954 Gene3D Transferase(Phosphotransferase) domain 1 770 951 - -
Rops4g00558 954 MobiDBLite consensus disorder prediction 685 705 - -
Rops4g00558 954 PANTHER OVARIAN-SPECIFIC SERINE/THREONINE-PROTEIN KINASE LOK-RELATED 394 938 - -
Rops4g00558 954 Pfam Protein kinase domain 459 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g00558 954 Pfam Protein kinase domain 788 926 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g00558 954 MobiDBLite consensus disorder prediction 606 642 - -
Rops4g00558 954 SMART serkin_6 457 926 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g00558 954 MobiDBLite consensus disorder prediction 684 705 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00558 Rops-Chr4 15381148 15388284 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00558 790 926 Core Cell Cycle Gene Families AT3G48750 31.944 2.19e-10 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-2 Rops4g00558 Pkinase 1.8e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00558 K02214 - gmx:100795742 1275.77