Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00554 ATGGAAGGTGAGAGAGATGTTCCCAATTATGAGCTTCAAGTTTCATTCACAAACACCCCTCAAGCCATCCATGAAATGGGTTTTGTTCAATTTGAAGAAAATCAAGTTCTTAGCTTCTTGGCTCCATCTACACAATCCCAATCTTCCCAGCTTTCTCAATCTCTAAACACTGGTAGTGGCGGCTCTGCAGCTGCTACCACCACCGTCACGACCGCAACCGCCACCGCTACAACCATAGGGTTCAGCCATAACGATCTAGTCACCAGAAATTCTTGGAATAATGAACAGGTGAGAACTATGGATCCCAAGGTTGTCAATGATGAAAATTGCACTGGAAATACTAGTGATGGAAACAACACATGGTGGAGGAGTGCAGCCTCAGAGAAGGGCAAGGTGAAAGTGAGAAGGAAGCTGAGAGAACCAAGGTTTTGTTTCCAAACAAGAAGTGATGTGGATGTGCTTGATGATGGTTATAAATGGAGGAAGTATGGTCAGAAAGTTGTCAAGAATAGCCTTCATCCAAGAAGTTATTACCGCTGCACCCATAACAACTGTAGGGTGAAAAAAAGAGTTGAACGACTCTCAGAAGATTGTCGTATGGTGATAACCACTTATGAAGGCAGACACAATCACTCTCCTTGTGACGACTCAAATTCATCTGAACATGAATGTTTCACCTCTTTTTGA 687 0.4323 MEGERDVPNYELQVSFTNTPQAIHEMGFVQFEENQVLSFLAPSTQSQSSQLSQSLNTGSGGSAAATTTVTTATATATTIGFSHNDLVTRNSWNNEQVRTMDPKVVNDENCTGNTSDGNNTWWRSAASEKGKVKVRRKLREPRFCFQTRSDVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEGRHNHSPCDDSNSSEHECFTSF* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00554 228 SMART WRKY_cls 154 213 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops4g00554 228 Gene3D WRKY domain 140 214 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops4g00554 228 Pfam WRKY DNA -binding domain 155 211 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops4g00554 228 SUPERFAMILY WRKY DNA-binding domain 146 212 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops4g00554 228 FunFam WRKY transcription factor 57 140 214 - -
Rops4g00554 228 ProSiteProfiles WRKY domain profile. 149 211 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops4g00554 228 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 56 215 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00554 Rops-Chr4 15273944 15282515 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00554 3 228 WRKY Transcription Factor Family AT2G44745 55.128 5.14e-74 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Rops4g00554 WRKY 1.6e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00554 - - var:108347245 393.275