Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00539 ATGCCTCCAAGAACGGTGAAGAGAGGTGGCTCGGCGAGTGGTGGGAAGAGGGGTGGAAGAACAACAAGGGGAACACCGAAAGCTTCACAGAATCAACAGCAAAATGAAGCTGTGGAAGAGAAACAGGTTGTTGAGGAGGAGCAAAAGGTGGAAGAGAACAACCCTGTCGTTGTTGAGGAGAAACCTGTTGTTGAAGAGAAACCAGTTGTTGAGGATAAGGCTATTGACGTGAACCAAATGGCTCCAGAGGCTGTAGAAGAAGCAACAACAACCCATGTGCCTAATGGGATGCCAGTGGTGAAAAACGATGAAGAGGAAGTTAAGGAGTCCATAGATGAATATGAAAAAGATGAACGCCTAGATTTGGAGGATAATGAACCTGAGTATGAACCTGAGGAGTATGGTGGAGTTGATTATGATGAGAAGGAAATTGAACAAGATGATGTTCAGGAGGTGGGAGATGAAGTAGAGGAAGAAGGTGAAGATAATGTAGGTGAAGAAGAGGGTGATACAGGTGAGGAGGAAGTTGAAGATGTTCATGATGAAATTGAGGGTGAAGAGGATGATGAGCATGCTGGTGAGGAGCATGAGCATGTGCATGTGGAGTTAGCTGATGTGGACGAAGAAGAACACCGTGAAGTTGTGAAGGAGAGGCGAAAGCGGAAAGAATTTGAAGTATTTGTTGGGGGCCTAGACAAGGATGCTACTGAAGGTGATCTGAGGAAGATTTTCAGTGAAGTTGGGGTTGTTACTGAGGTCAGGTTGATGATGAACCCTCAGACTAGAAAGAACAAGGGATTTGCATTCTTGCGTTTTGAAACTGTGGAACAAGCAAAACGAGCTGTAGCAGAGCTCAGAAATCCAGTGATTAATGGCAAACAGTGTGGTGTTACTCCAAGTCAGGACAGTGATACCCTCTATTTGGGAAACATATGCAAGACATGGACAAAGGAAGCTTTAAAGGAGAAGTTGAAACATTATGGAGTTACAAATGTTGAGGATTTGACTTTGGTAGAAGATAGTAATGATGAAGGAATGAACCGTGGATTTGCGTTTTTGGAATTTTCCTCTCGTTCAGATGCTATGGATGCCTTTAAGCGATTGCAGAAGAGGGATGTTGTGTTTGGAGTAGATAAGCCTGCAAAGGTTTCCTTTGCAGATTCCTTTATTGACCCGGGTGATGAAATTATGGCACAGGTTAAAACTGTATTTATTGATGCACTGCCTCCTTCGTGGGATGAAGATTATGTCCGGGATCTTCTTAAGAAATATGGGGAGATTGAAAAGATTGAACTTGCCAGGAACATGCCAGCTGCTCGTAGGAAGGACTATGGATTTGTTACATTTGGCACACATGATGCTGCTATAAGATGTGCTGAAAGCATTACTGGTACAGAATTGGGTGAAGGTGACAAGAAGGCGAAAGTAAGGGCTAGGTTGTCAAGACCACTTCAAAGAGGCCGTGGAAAACATGTTAGTCGTGGGGACTATCGTTCTGGTCGTGGATCTGGAATAATGTCAAGGCCTTCGTGGAGCCGGCCAGCACCACGAAGTTTTTCTTCCCGTGGGTTAAGAGGAATTGGAAGTCGTGTTCCACCAATCAGGCCTGTCAGTGTGAGAGATAGACGCCCTGTAATGTCCATGCCAGTAAGAAGTAGGCCAATGGCTCCTCCGGCTAGGTCCTATGATAGGAGACCGGCTGCTGCAGCATATCCAAAAAGTAGCATGAAGAGAGATTATGGTCGGCGTGAGGATCTACCACCTCCAAGAAGTAGAGTCGCTGTAGATTATGGCTCAAGGGTGACCTCTGAAAGACGTCCATCTTACAGGGATTATCCAGCCCGTGGTCCTGGCTACTCTGAGCTCCCTAGAAGTACATCTCGTGCTGCTGCACCAAGGAGAGGGTATGTAGATGATGGCTATGGCCAAAGATTTGAGAGGCCTCCTCCTCCACCTCCTCCTCCCCATATGAGTTATCGTGAAGGACGCCCCCGTGATTATGATGCTCTGTCTGGCTCAAAACGTTCTTATGCTGCTATTGATGATGTTCCTCCACGATATGCGGATACAGGCGTTCGCCAATCAAGAGCTCGATTGGAATATGACTACGGTGGTAGTGCTTCACAGTATGGGGATGCTTATGGTGATAGACTTGGAAGATCTAGTATGGGATATGGTAGTGGCAGCAGAAGTTCTATTTCTAGTCAGGATTCACATGGGATGTACAGCAGTCGTCAGGGCATGAGTTATGGAGGAGGCTCTTTCGGTGGTAGTGATGTTGGTGGCATGTACTCATCAAGTTATGGTGGTGATTACATTTCTCGTGGAAGTGATGTGGGTGGCAGTTCGTATTCATCAATGTATTCTGGCAGGGGTGTGGGTGGTGGTAGCAGTTACATGGGTGGTGGAGGATCGGGATCTTATTATTGA 2430 0.4617 MPPRTVKRGGSASGGKRGGRTTRGTPKASQNQQQNEAVEEKQVVEEEQKVEENNPVVVEEKPVVEEKPVVEDKAIDVNQMAPEAVEEATTTHVPNGMPVVKNDEEEVKESIDEYEKDERLDLEDNEPEYEPEEYGGVDYDEKEIEQDDVQEVGDEVEEEGEDNVGEEEGDTGEEEVEDVHDEIEGEEDDEHAGEEHEHVHVELADVDEEEHREVVKERRKRKEFEVFVGGLDKDATEGDLRKIFSEVGVVTEVRLMMNPQTRKNKGFAFLRFETVEQAKRAVAELRNPVINGKQCGVTPSQDSDTLYLGNICKTWTKEALKEKLKHYGVTNVEDLTLVEDSNDEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVVFGVDKPAKVSFADSFIDPGDEIMAQVKTVFIDALPPSWDEDYVRDLLKKYGEIEKIELARNMPAARRKDYGFVTFGTHDAAIRCAESITGTELGEGDKKAKVRARLSRPLQRGRGKHVSRGDYRSGRGSGIMSRPSWSRPAPRSFSSRGLRGIGSRVPPIRPVSVRDRRPVMSMPVRSRPMAPPARSYDRRPAAAAYPKSSMKRDYGRREDLPPPRSRVAVDYGSRVTSERRPSYRDYPARGPGYSELPRSTSRAAAPRRGYVDDGYGQRFERPPPPPPPPHMSYREGRPRDYDALSGSKRSYAAIDDVPPRYADTGVRQSRARLEYDYGGSASQYGDAYGDRLGRSSMGYGSGSRSSISSQDSHGMYSSRQGMSYGGGSFGGSDVGGMYSSSYGGDYISRGSDVGGSSYSSMYSGRGVGGGSSYMGGGGSGSYY* 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00539 809 MobiDBLite consensus disorder prediction 576 590 - -
Rops4g00539 809 Gene3D - 393 508 IPR012677 -
Rops4g00539 809 MobiDBLite consensus disorder prediction 1 64 - -
Rops4g00539 809 MobiDBLite consensus disorder prediction 85 195 - -
Rops4g00539 809 MobiDBLite consensus disorder prediction 723 745 - -
Rops4g00539 809 FunFam RNA recognition water-stress protein1 391 512 - -
Rops4g00539 809 MobiDBLite consensus disorder prediction 483 670 - -
Rops4g00539 809 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 224 302 IPR000504 GO:0003723
Rops4g00539 809 FunFam Heterogeneous nuclear ribonucleoprotein Q 305 387 - -
Rops4g00539 809 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 155 304 - -
Rops4g00539 809 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 304 388 IPR000504 GO:0003723
Rops4g00539 809 SUPERFAMILY RNA-binding domain, RBD 225 369 IPR035979 GO:0003676
Rops4g00539 809 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 140 809 - -
Rops4g00539 809 CDD RRM_SF 226 297 - -
Rops4g00539 809 SMART rrm1_1 305 384 IPR000504 GO:0003723
Rops4g00539 809 SMART rrm1_1 402 477 IPR000504 GO:0003723
Rops4g00539 809 SMART rrm1_1 225 298 IPR000504 GO:0003723
Rops4g00539 809 MobiDBLite consensus disorder prediction 23 38 - -
Rops4g00539 809 Gene3D - 305 387 IPR012677 -
Rops4g00539 809 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 401 483 IPR000504 GO:0003723
Rops4g00539 809 MobiDBLite consensus disorder prediction 39 64 - -
Rops4g00539 809 MobiDBLite consensus disorder prediction 116 191 - -
Rops4g00539 809 Coils Coil 100 120 - -
Rops4g00539 809 CDD RRM_SF 403 477 - -
Rops4g00539 809 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 306 372 IPR000504 GO:0003723
Rops4g00539 809 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 226 294 IPR000504 GO:0003723
Rops4g00539 809 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 403 468 IPR000504 GO:0003723
Rops4g00539 809 Gene3D - 138 304 IPR012677 -
Rops4g00539 809 MobiDBLite consensus disorder prediction 99 115 - -
Rops4g00539 809 Coils Coil 27 47 - -
Rops4g00539 809 MobiDBLite consensus disorder prediction 724 745 - -
Rops4g00539 809 SUPERFAMILY RNA-binding domain, RBD 396 504 IPR035979 GO:0003676
Rops4g00539 809 CDD RRM_SF 306 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00539 Rops-Chr4 14923819 14930644 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00539 219 482 Eukaryotic Initiation Factors Gene Family AT1G49760 24.080 2.44e-15 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00539 - - gmx:100779340 964.526
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g00539 4 14923819 14930644 Rops4g00539 4 14923819 14930644 ECH