Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00509 ATGGATGATGGGTCATGGGAAAAATGGCTTCTTGATTTGGAAATGGATGAACATGACATGAACCCTCTTGTTGAAGAGTTCATAAATGAAGAGAATTCACTGCATTCAGAACTATATTTGGGAAGTCACTCTTCTGAGAACACTGGCTTTGGTAACACTACTAGTCTCAAACAACAACATGCTTTTTCGGAGAAACCTATGTTATTGTCTTCAATGTCCCATATTGTGTCTTTTGAGGACTCCACTACTATGCCAAATAAGAAAACATGTCAAAATCATCATGATGAAGAACTACACAATAGAAAATCCAAGAGGGGTAGAAACTCTTCTCAGATACGTGATCACATAATCTCTGAGAGAAAGAGGAGAGAGAATCTCACCAGAATGTTCATAGCACTTTCAGCCATTATCCCTGGCTTGAAAAAGATGGACAAGGCTTCTATCATTAAAAACGCTATCAATTATGTGAAACATCTTCAGAATCGTGTAAAAGATTTAGAGGAGCAAACAAATAAAAGAAAGATGGAATCAATGGCATGCTTCAAAAAGGACAAAATCAATGGTTCTGTTGTTGATGTCTTTTCATGCACCTCTGATGACTTACATAGACCTATCAAGGCATTCCCCAATGTTGAAGCAAGCATCTCTGCAAAAGATGTACTCATTAGAGTCATGTGTGAGAAACAAAAGGACATTGTAATGAAGCTATTGGCAAAGCTTGAAGTTCATAATCTATCCCTTGTTTGTACCAATGTTTTGCCATTTGGGAATTCTACTCTAGTCATTACCATCATTGCTCAGGTGGACCATGAATTCAGCATGACAAGGGATGACCTAGTCAAAAATTTGATCGAGGATTTGTTGGAGTGTTGTAGCTTGCAACAATAA 888 0.3761 MDDGSWEKWLLDLEMDEHDMNPLVEEFINEENSLHSELYLGSHSSENTGFGNTTSLKQQHAFSEKPMLLSSMSHIVSFEDSTTMPNKKTCQNHHDEELHNRKSKRGRNSSQIRDHIISERKRRENLTRMFIALSAIIPGLKKMDKASIIKNAINYVKHLQNRVKDLEEQTNKRKMESMACFKKDKINGSVVDVFSCTSDDLHRPIKAFPNVEASISAKDVLIRVMCEKQKDIVMKLLAKLEVHNLSLVCTNVLPFGNSTLVITIIAQVDHEFSMTRDDLVKNLIEDLLECCSLQQ* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00509 295 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 113 178 IPR036638 GO:0046983
Rops4g00509 295 SMART finulus 116 165 IPR011598 GO:0046983
Rops4g00509 295 PANTHER BHLH TRANSCRIPTION FACTOR 44 287 - -
Rops4g00509 295 Pfam Helix-loop-helix DNA-binding domain 115 160 IPR011598 GO:0046983
Rops4g00509 295 Gene3D - 109 183 IPR036638 GO:0046983
Rops4g00509 295 MobiDBLite consensus disorder prediction 89 113 - -
Rops4g00509 295 MobiDBLite consensus disorder prediction 82 113 - -
Rops4g00509 295 Coils Coil 149 176 - -
Rops4g00509 295 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 110 159 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00509 Rops-Chr4 14276898 14279682 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00509 71 283 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 42.259 4.54e-46 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops4g00509 HLH 5.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00509 - - aprc:113850789 286.96