Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00508 ATGGATGATGGGTCATGGGAAAAATGGCTTCTTGATTTGGAAATGGATGAACATGACATGAACCCTCTTGAAGAAGAGTTCATCAATGGAAATAATTCACTACAGTCAGAACTATCTTGGGAGAGTCACTCTTATGATTCAAATTTCATGACTGAAAACACTGGCTTTGGTAACACTACTAGTCTCAAACAACAACATGGTTCTTCAGAGAAACCTGTGTTATTGTCCTCAATGTCCCACATTCTGTCTTTTGAGGACTCCACTACAGTGCCAAATAAGAAAACATACCAAAATCGTCATGATCAACAATCAAGGGAGATCCCAGAAGAACTACACAATAGAAAATCCAAGAGGGGTAGAAACTCTTCTCAGATACGAGATCACATAATCTCTGAGAGAAAAAGAAGAGAGAATCTCACCAGAATGTTCATAGCACTTTCAGCCATTATTCCTGACTTAAAAAAGATGGACAAGGCTTCTATCATTAAAAACGCTATCAATTATGTGAAACATCTTCAGAATCGTGTAAAAGATTTAGAGGAGCAAACAAAGAAAAGAAAGATGGAATCAATGGCATGCTTCAAAAAGGACAAAATCAATGGTTCTATTGCTGATGTCTTTTCATGCACCTCTGATGACTTACATAGACCTATCAAGGCATTCCCCAATGTTGAAGCAAGCATCTCTGCAAAAGATGTACTCATTAGAGTCATGTGTGAGAAACAAAAGGACATTGTAATGAAACTATTGGCCAAGCTTGAAGTTCATAATCTATCCCTTGTTTGTACCAATGTTTTGCCATTTGGGAATTCTACTCTAGTCATTACCATCATTGCTCAGGTGGACCACGAATTCAGCATGACAAGGGATGACCCAGTGAAAAATTTGATTGAGGATTTGTTGGGGTGTTGTAGCTTGCAACAATAA 927 0.3797 MDDGSWEKWLLDLEMDEHDMNPLEEEFINGNNSLQSELSWESHSYDSNFMTENTGFGNTTSLKQQHGSSEKPVLLSSMSHILSFEDSTTVPNKKTYQNRHDQQSREIPEELHNRKSKRGRNSSQIRDHIISERKRRENLTRMFIALSAIIPDLKKMDKASIIKNAINYVKHLQNRVKDLEEQTKKRKMESMACFKKDKINGSIADVFSCTSDDLHRPIKAFPNVEASISAKDVLIRVMCEKQKDIVMKLLAKLEVHNLSLVCTNVLPFGNSTLVITIIAQVDHEFSMTRDDPVKNLIEDLLGCCSLQQ* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00508 308 MobiDBLite consensus disorder prediction 87 124 - -
Rops4g00508 308 Pfam Helix-loop-helix DNA-binding domain 128 173 IPR011598 GO:0046983
Rops4g00508 308 SMART finulus 129 178 IPR011598 GO:0046983
Rops4g00508 308 Gene3D - 122 196 IPR036638 GO:0046983
Rops4g00508 308 Coils Coil 162 189 - -
Rops4g00508 308 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 126 190 IPR036638 GO:0046983
Rops4g00508 308 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 123 172 IPR011598 GO:0046983
Rops4g00508 308 MobiDBLite consensus disorder prediction 98 124 - -
Rops4g00508 308 PANTHER BHLH TRANSCRIPTION FACTOR 26 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00508 Rops-Chr4 14220078 14222612 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00508 77 296 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 42.678 1.28e-44 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops4g00508 HLH 2.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00508 - - gmx:100815351 302.367