Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00507 ATGAAGGAGATGAGGTCAACCAAACTCATAGACGCCATTACGGGGTCCACAAGCATGACCATATCCTACAACTATGAGTCACACCACAACAAGGGGATGCTCCTCGAACACAGCGACGACTACCTCCCTGACTTAGGCCTGCGAGTCACCATCGCTTTCAACCACTTCGGTGGGAAAATCGTCCAGAAGATCCCACGTTGCAGAAGAGGTTACATTAATGTCGTCAACAATGACTTCACTGAGTGGGAGATGTATGCCATTGGAGGGAATGGTGAACCCACCATTAATAGCCAGGGTGCACCCATTCCTCCTTGCATATCCCAGCTTGAAGGTGGACTTGTTCAAGTCGCGGTAGAAGTCGAGGATCGTGCACAACGTTTCGCAATCACCAGAGTAAATGCTGATGATGTTCGAGTCACTGTAGCTGCTCCTACAGCTCGTGGAGAAGCCAACAACGAACTTTTGGAATTTATGGGAAACGTTTTGGGCTTAAGATAG 498 0.488 MKEMRSTKLIDAITGSTSMTISYNYESHHNKGMLLEHSDDYLPDLGLRVTIAFNHFGGKIVQKIPRCRRGYINVVNNDFTEWEMYAIGGNGEPTINSQGAPIPPCISQLEGGLVQVAVEVEDRAQRFAITRVNADDVRVTVAAPTARGEANNELLEFMGNVLGLR* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00507 165 PANTHER PECTATE LYASE 18-RELATED 8 99 IPR045032 GO:0030570
Rops4g00507 165 Pfam Pectate lyase 6 88 IPR002022 -
Rops4g00507 165 SMART amb_all 1 104 IPR002022 -
Rops4g00507 165 PRINTS Pollen allergen Amb family signature 63 82 IPR018082 -
Rops4g00507 165 PRINTS Pollen allergen Amb family signature 85 104 IPR018082 -
Rops4g00507 165 SUPERFAMILY Pectin lyase-like 8 99 IPR011050 -
Rops4g00507 165 Gene3D - 2 103 IPR012334 -
Rops4g00507 165 Gene3D - 104 165 IPR036591 -
Rops4g00507 165 Pfam Uncharacterised ACR, YggU family COG1872 114 165 IPR003746 -
Rops4g00507 165 SUPERFAMILY YggU-like 103 164 IPR036591 -
Rops4g00507 165 SMART DUF167_2 110 165 IPR003746 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00507 Rops-Chr4 14217682 14218179 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00507 9 104 Polysaccharide Lyase AT3G53190 70.000 4.09e-44 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00507 K01728 - qsu:112032645 157.918