Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00506 ATGGATGATGGGTCATGGGAAAAATGGCTTCTTGATTTGGAAATGGATGAACATGACATGAACCCTCTTGAAGAAGAGTTCATCAATGGAAATAATTCACTACAGTCAGAACTATCTTGGGAGAGTCACTCTTATGATTCAAATTTCATGACTGAAAACACTGGCTTTGGTAACACTACTAGTGTCAAACAACAACATGGTTCTTCAGAGAAACCTGTGTTATTGTCCTCAATGTCCCACATTCTGTCTTTTGAGGACTCCACTACAGTGCCAAATAAGAAAACATACCAAAATCGTCATGATCAACAATCAAGGGAGATCCCAGAAGAACTACACAATAGAAAATCCAAGAGGGGTAGAAACTCTTCTCAGATACGAGATCACATAATCTCTGAGAGAAAAAGAAGAGAGAATCTCACCAGAATGTTCATAGCACTTTCAGCCATTATTCCTGACTTGAAAAAGATGGACAAGTCTTCTATCATTAACAACGCTATCAATTATGTGAAACATCTTCAGAATCGTGTAAAAGATTTAGAGGAGCAAACCAACAAAAGAAAGAAAGAATCTTTGGTATTCATTAAAAAGGACAAAATCAATGGTTCTATTGTCGATGACTTTTCATGCACCTCTGATGACTTACATAGACCTATCGAGGCATTCCCCAATGTTGAAGCAAGCATCTCTGCAAAAGATGTACTCATTAGAGTCATGTGTGAGAAACAAAAGGACATTGTAATGAAGCTATTGGCAAAGCTTGAAGCTCATGATCTATCCCTTGTTTGTAGCAATGTTTTGCCATTTGGGAACTCTACTCTAGTTATTACCATCATTGCTCAGGTGGACCATGAATTCAACATGACAATGGACGACCTAGTGAAAAATTTGATTGAGGATTTGTTGGAGTGTTGTAATTTGCAACAATAA 927 0.3743 MDDGSWEKWLLDLEMDEHDMNPLEEEFINGNNSLQSELSWESHSYDSNFMTENTGFGNTTSVKQQHGSSEKPVLLSSMSHILSFEDSTTVPNKKTYQNRHDQQSREIPEELHNRKSKRGRNSSQIRDHIISERKRRENLTRMFIALSAIIPDLKKMDKSSIINNAINYVKHLQNRVKDLEEQTNKRKKESLVFIKKDKINGSIVDDFSCTSDDLHRPIEAFPNVEASISAKDVLIRVMCEKQKDIVMKLLAKLEAHDLSLVCSNVLPFGNSTLVITIIAQVDHEFNMTMDDLVKNLIEDLLECCNLQQ* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00506 308 MobiDBLite consensus disorder prediction 86 124 - -
Rops4g00506 308 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 126 188 IPR036638 GO:0046983
Rops4g00506 308 Coils Coil 162 189 - -
Rops4g00506 308 PANTHER BHLH TRANSCRIPTION FACTOR 26 300 - -
Rops4g00506 308 SMART finulus 129 178 IPR011598 GO:0046983
Rops4g00506 308 MobiDBLite consensus disorder prediction 98 124 - -
Rops4g00506 308 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 123 172 IPR011598 GO:0046983
Rops4g00506 308 Gene3D - 122 193 IPR036638 GO:0046983
Rops4g00506 308 Pfam Helix-loop-helix DNA-binding domain 128 173 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00506 Rops-Chr4 14183795 14186661 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00506 77 296 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 42.678 2.30e-47 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops4g00506 HLH 5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00506 - - gmx:100815351 296.589