Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00505 ATGGATGATGATGGGTCATGGGAGAAATGGCTTCTTGATTTGGAAATGGATGAATGCCACATGAACCCTCTTGAGGAAGAGTTGATCAATGGAGAGAATTCATTGCAATTAGAACTATCTTGGGAAAGTCACTCTTCTGATTCAAACACTTGCTGTGGTAATGATAACACTAGCAGCCTCAAACAACAACATGGGTCTTCGGAGAAACCTGTGTTATGGTCTTCAAATTCCTACATTCTATCTTTTGAGGACTCCACTGCTATGCCAAATAAGAAAACATGTCAAAATCATCATGATGAAGAGCTACACAATAGAAAATCCAAGAGGGGTAGAAGCTCAAGAGATCACATAATAGCCGAGAGAAAGAGGAGAGAGAATCTCACCAAAATGTTCATAGCACTTTCGGCTATTATTCCTGGCTTGAAAAAGACGGACAAGGTTTCTATCATGAACAACACTATCGAGCATGTGAAATATCTTCAGAATCGTGTAAAAGATTTAGAGGAAAAAATCAAGAAAAGAAAGATAGAATCCCTAGTATGCTTCAAAAAAGACAAATCCAACGTCACTGTTGCTGACAACTCTGAACCCATCAAGACATTGCCCAATGTTGAAGCAAGAGTCTCAGCTAAAAATGTACACATCAGAGTCATGTGTGAGAAACAAAAGCACATTGTAATGAAGCTATTGGCCAAGCTTGAAGCTCATAATCTATCCCTTGTTTGTAGCAATGTTTTTCCATTTGGGAATTATGCTCTAAACATTACTATCATTGCTCAGGTGGACCATGAATTCAGCATTACAGTGGATGATCTAGTGAAAAATTTGATGGAGGATTTGTTGGGGTGTTGTAACTTGCCACAATAA 867 0.3852 MDDDGSWEKWLLDLEMDECHMNPLEEELINGENSLQLELSWESHSSDSNTCCGNDNTSSLKQQHGSSEKPVLWSSNSYILSFEDSTAMPNKKTCQNHHDEELHNRKSKRGRSSRDHIIAERKRRENLTKMFIALSAIIPGLKKTDKVSIMNNTIEHVKYLQNRVKDLEEKIKKRKIESLVCFKKDKSNVTVADNSEPIKTLPNVEARVSAKNVHIRVMCEKQKHIVMKLLAKLEAHNLSLVCSNVFPFGNYALNITIIAQVDHEFSITVDDLVKNLMEDLLGCCNLPQ* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00505 288 MobiDBLite consensus disorder prediction 90 119 - -
Rops4g00505 288 MobiDBLite consensus disorder prediction 93 119 - -
Rops4g00505 288 Pfam Helix-loop-helix DNA-binding domain 115 161 IPR011598 GO:0046983
Rops4g00505 288 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 115 175 IPR036638 GO:0046983
Rops4g00505 288 MobiDBLite consensus disorder prediction 46 68 - -
Rops4g00505 288 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 111 160 IPR011598 GO:0046983
Rops4g00505 288 Coils Coil 150 177 - -
Rops4g00505 288 PANTHER BHLH TRANSCRIPTION FACTOR 44 280 - -
Rops4g00505 288 Gene3D - 99 176 IPR036638 GO:0046983
Rops4g00505 288 SMART finulus 117 166 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00505 Rops-Chr4 14165568 14167889 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00505 75 280 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 39.419 7.02e-44 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops4g00505 HLH 3.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00505 - - gmx:100799087 293.893