Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00504 ATGAATTGCTTTTACTACTTCAAAGACAAATCCAAGAGGAGGAGGCAAAGATCAGCACCTGAACTGAAAGAGCAAGAGAAGCTCCAGTTTTCAGGTGCTGAAAGAGTGACCAAATCCTCATGCTCATCCACCTCAACTCGAGGTATACCAGAACTGTATGAGGAAAAAGGTGGTAATTTGAGGGTCTTCTCCTACACAGAGCTCAAACGTGCAACAAGTGATTTCAGCAGGCTTCTTAAGATAGGAGAAGGTGGATTTGGAAGTGTATATAAAGGTTCGATCAAGCCAGTTGATGGGGATGGTGATCCTGTTTTAGTTGCCATCAAAAGGCTTAACAAGGATGCATTACAGGGTCATAAGCAATGGTTGACTGAAGTTCAGTTTCTTGGTGTTGTGGAGCACCCAAATCTTGTCAAGCTTATTGGATACTGTTCTTTGGATGGTGAAAGAGGGATCCAGAGACTACTTGTGTATGAATTTATGCCAAATAAAAGCTTAGATTCTCATCTTTTCAATAAAGCATATGATCCTCTTCCTTGGAAAACAAGACTTGAAATAGCACTTGGAGCAGCTCAAGGGTTATCTTATCTGCATGAAGAATTAGAAGTTCAGGTGATATATCGAGATTTTAAATGCTCAAATGTACTACTGGATGAAAATTTTAAGCCAAAACTTTCTGATTTTGGACTTGCTAGGGAGGGACCTGTAGGTGGGGATACTCATGTTTCAACTGCTGTGATGGGGACATATGGTTATGCAGCTCCAGATTACATTCAAACAGGCCATCTCACTGCCAAGAGTGATGTGTGGAGTTTTGGTGTGGTGTTATATGAAATACTAACTGGGAGGCGTTCAGTGGAAAGAAACAGGCCCAAAATGGAGCAGAAACTTTTGGATTGGGTGAAACATTATCCTCCTGATAGCAAGAAGTTTGATTTGATAATGGATCCAAGACTTGAGGGACCATATTCCATTAATGGAGCAAGAAAATTGGCCAAGCTCGCGGATCATTGCCTGCGTAAGAGCTCGAAAGATAGACCAACAATGAGTCAGGTGGTGGAGAGATTGAAGCTGATAATCCAAGAATGTGATGAAGAAGACCCTGCAGTGAAAAGCATTGAGGTATCTGAAAATGATTCAGTTGAGCCTGAAGAAAAGCCAAGTGAATCAGCCTCTTCAGAACTATGGAAAAAGAGGATGGAACATCTTGCAAAACTTGGTGAGCATGTGGAGAGTGCTAGTAGAAGAAGATTTATGATCCTACAGAGAGCCAATGTGTCTTCATAG 1287 0.4149 MNCFYYFKDKSKRRRQRSAPELKEQEKLQFSGAERVTKSSCSSTSTRGIPELYEEKGGNLRVFSYTELKRATSDFSRLLKIGEGGFGSVYKGSIKPVDGDGDPVLVAIKRLNKDALQGHKQWLTEVQFLGVVEHPNLVKLIGYCSLDGERGIQRLLVYEFMPNKSLDSHLFNKAYDPLPWKTRLEIALGAAQGLSYLHEELEVQVIYRDFKCSNVLLDENFKPKLSDFGLAREGPVGGDTHVSTAVMGTYGYAAPDYIQTGHLTAKSDVWSFGVVLYEILTGRRSVERNRPKMEQKLLDWVKHYPPDSKKFDLIMDPRLEGPYSINGARKLAKLADHCLRKSSKDRPTMSQVVERLKLIIQECDEEDPAVKSIEVSENDSVEPEEKPSESASSELWKKRMEHLAKLGEHVESASRRRFMILQRANVSS* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00504 428 Gene3D Phosphorylase Kinase; domain 1 49 160 - -
Rops4g00504 428 Gene3D Transferase(Phosphotransferase) domain 1 161 381 - -
Rops4g00504 428 ProSitePatterns Protein kinases ATP-binding region signature. 81 109 IPR017441 GO:0005524
Rops4g00504 428 Pfam Protein tyrosine and serine/threonine kinase 80 356 IPR001245 GO:0004672|GO:0006468
Rops4g00504 428 SUPERFAMILY Protein kinase-like (PK-like) 58 357 IPR011009 -
Rops4g00504 428 CDD STKc_IRAK 81 359 - -
Rops4g00504 428 FunFam PTI1-like tyrosine-protein kinase 3 161 370 - -
Rops4g00504 428 MobiDBLite consensus disorder prediction 372 395 - -
Rops4g00504 428 ProSiteProfiles Protein kinase domain profile. 75 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g00504 428 PANTHER OS01G0588500 PROTEIN-RELATED 32 358 - -
Rops4g00504 428 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00504 Rops-Chr4 14115945 14121583 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00504 1 396 Glycoside Hydrolase AT3G07070 41.627 1.57e-96 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Rops4g00504 PK_Tyr_Ser-Thr 6.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00504 - - gmx:100784625 724.161