Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00502 ATGTTCCGCCGAGCAACAGCTACCCTCCTCTCACGCGCCTCCGCCAGCCGCAGATTCTCGACCGATGTGGCTGCGGCGGAGGCGAAGGAGGAGTCGAAGTTCGTGGAGGAGTGGAAGAAAGTGAGCCGTAATATGGACCCACCGAAGACTCCACTTGCATACATGAAACCTCGCCCTCCCACTCCTTCAACCCTTCCCACCAAACTCACTGTCAATTTCGTCCTTCCCTATTCTTCACAATTGGCAGCTAAAGAGGTTGATATGGTCATAGTACCAGCAACAACTGGCCATATGGGTGTTCTCCCAGGACATGTAGCTACAATTGCAGAGTTGAAACCTGGGGTCCTATCTGTACACGAAGGGAATGATGTGACAAAGTATTTTGTCAGCAGTGGCTTTGCTTTCATCCATGCAAACTCTGTTGCTGATATAATAGCTGTTGAGGCTGTACCATTAGATCGAATTGACGCAAGCCTTGTCCAGAAGGGTCTTCAAGAGTTCACTCAGAAGCTCAGCTCAGCCTCAACTGATTTGGAGAAAGCTGAAGCTCAGATTGGAGTTGATGTGCATAGTGCCCTCAACTTTGCTCTTACAGGCTAA 600 0.4967 MFRRATATLLSRASASRRFSTDVAAAEAKEESKFVEEWKKVSRNMDPPKTPLAYMKPRPPTPSTLPTKLTVNFVLPYSSQLAAKEVDMVIVPATTGHMGVLPGHVATIAELKPGVLSVHEGNDVTKYFVSSGFAFIHANSVADIIAVEAVPLDRIDASLVQKGLQEFTQKLSSASTDLEKAEAQIGVDVHSALNFALTG* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00502 199 Pfam ATP synthase, Delta/Epsilon chain, beta-sandwich domain 69 141 IPR020546 GO:0015986
Rops4g00502 199 NCBIfam ATP synthase F1 subunit epsilon 80 184 IPR001469 GO:0015986|GO:0045261|GO:0046933
Rops4g00502 199 Hamap ATP synthase epsilon chain [atpC]. 67 187 IPR001469 GO:0015986|GO:0045261|GO:0046933
Rops4g00502 199 PANTHER ATP SYNTHASE DELTA/EPSILON CHAIN 28 199 IPR001469 GO:0015986|GO:0045261|GO:0046933
Rops4g00502 199 Coils Coil 164 184 - -
Rops4g00502 199 CDD F1-ATPase_delta 69 192 IPR001469 GO:0015986|GO:0045261|GO:0046933
Rops4g00502 199 Gene3D - 156 197 - -
Rops4g00502 199 FunFam ATP synthase delta 58 155 - -
Rops4g00502 199 SUPERFAMILY Epsilon subunit of F1F0-ATP synthase N-terminal domain 69 150 IPR036771 -
Rops4g00502 199 Gene3D - 59 155 IPR036771 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00502 Rops-Chr4 14083927 14088303 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00502 1 199 Primary Pumps ATPases AT5G47030 70.352 6.17e-102 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00502 K02134 - gmx:100780778 301.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g00502 4 14083927 14088303 Rops4g00502 4 14083927 14088303 ECH